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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre6g00534 ATGGCTACAAGTCTTTTGCACGAACTTGCAGATTCTTACACTGAAACCACTGATGAAGACGATGAAGAAGAAGAGTACAATCAGGAAAGAATTCATGGCATGTGCAGTCCACGTGGTCGACCCACACTTAATCCTAGAGATCCATGGGTCCACCAATGGAACCGAGTCTACCTTCTGGTGTGTGCTATGGGTCTGTTTGTTGACCCGCTTTTCTTCTACACACTCTCCATAAGCGAGTCGTGCATGTGTGTCTATGTGGACGGGTGGCTCGCGGTCTTAGTGACCGCGCTCCGGTGCATGACGGATGTGTTTCATGTTTGGAACATGTGGTTGCACTTCAAGATGAACCGGTGGTGGAGATATTCTACACCACATGGACTCCGGTTGAGCAACGATCAGTCGACTTTACAGAGCCAGTTTTCGTTTGACATCTTCGTCATCCTCCCAATTCCTCAGGTAGTATTATGGGTCGTGATTCCGGCATTGCTACAAAAAGGTTCATCAACATTAGTGATGACTGTTTTCTTGATCATGTTTCTCCTCCAATTCCTTCCCAAGATCTATCACTTTGTCTGTCTCTTAAGACGAATGCAAAGCTTCTCTGGCTACATTTTTGGCACTGTTTGGTGGGGAATCGCTCTCAACCTCATAGCATACTTTGTAGCCTCTCATGCTGTGGGAGCATGTTGGTACTTGCTAGGAACCCAAAGGACTGTAAAATGCCTTAATGAGAAGTGCATGGAGACGTATGGATGCAAATCAAGAATCTTGACGTGCGAAGAGTATATGTATTATGGAACAAACGGGTTGGTTCTAGACCACACAAGATTGTCATGGGGCGAGAACAGAAGCGCAAGGTCTACATGTCTTGAAGATGATGATAACTTTAGCTATGGAGTTTACAAATGGACCGTGCAACTTGTTATCAATGAGAACCGGTTGGAGAAGATATTGTTCCCCATTTTTTGGGGACTTATGACTCTCAGTACATTTGGGAATTTGGAGAGCACAACAGATGGGTTGGAAGTAGTGTTCATCATCCTCGTTCTTACCACCGGGCTCCTTCTAGTCACCATGCTGATAGGAAACATCAAGGTGTTTTTGCATTCAACAACATCAAAGAAACAAGCGATGCAATTAAAGATGAGAAACTTAGAGTGGTGGATGAGTAGGAAACACCTTCCTCATGGGCATCGACAACGAGTCAGAAACTACGAGCGGCAAAAGTGGGCAGCAATGCGTGGAGTGAACGAGTGTGAGATGATCCACGATTTGCCAGAAGGACTTCGAAGGGACATCAAATACCATCTTTGTTTGGATTTGGTTCGACAGATTACTAGAGAGGGAGATCCCGTACAAAGAATGTTATTCATAGTACGTGGACATCTTCAAAGCAAGCAAGTTCTACGAGACGGGATCAAAAGTTATTGCACGTTAGGCCCCGGAAACTTCATTGGGGACGAGCTCTTGTCATGGTGCCTAAAGAGACCATTTGTAGAACGACTACCACCATCATCTTCGACATTAGTCACTCTTGAGACCACAGAAGCATTTGGACTAGACGCTGAAGATGTGAAATATGTCACACAACATTTTAGGTACACTTTTGTGAAGGAAAAAGTAAAGATGAGTGCACGATATTATTCTCCTGGGTGGAGGACTTGGGCAGCAGTCGCAATTCAGTTGGCTTGGAGGCGGTGCAAACATAGGCTCACACTCACGTCATTGTCATTCATTAGACCGAGGAGACCTTTGTCGAGGTGTTGTTCACTTGAGGAAGATAGGTTAAGGCTTTATACGGCTCTATTGACTTCACCAAAGCCTAATCGAGACGATTTCGACTTTTAA 1848 44.91 MATSLLHELADSYTETTDEDDEEEEYNQERIHGMCSPRGRPTLNPRDPWVHQWNRVYLLVCAMGLFVDPLFFYTLSISESCMCVYVDGWLAVLVTALRCMTDVFHVWNMWLHFKMNRWWRYSTPHGLRLSNDQSTLQSQFSFDIFVILPIPQVVLWVVIPALLQKGSSTLVMTVFLIMFLLQFLPKIYHFVCLLRRMQSFSGYIFGTVWWGIALNLIAYFVASHAVGACWYLLGTQRTVKCLNEKCMETYGCKSRILTCEEYMYYGTNGLVLDHTRLSWGENRSARSTCLEDDDNFSYGVYKWTVQLVINENRLEKILFPIFWGLMTLSTFGNLESTTDGLEVVFIILVLTTGLLLVTMLIGNIKVFLHSTTSKKQAMQLKMRNLEWWMSRKHLPHGHRQRVRNYERQKWAAMRGVNECEMIHDLPEGLRRDIKYHLCLDLVRQITREGDPVQRMLFIVRGHLQSKQVLRDGIKSYCTLGPGNFIGDELLSWCLKRPFVERLPPSSSTLVTLETTEAFGLDAEDVKYVTQHFRYTFVKEKVKMSARYYSPGWRTWAAVAIQLAWRRCKHRLTLTSLSFIRPRRPLSRCCSLEEDRLRLYTALLTSPKPNRDDFDF 615
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre6g00534 615 SUPERFAMILY cAMP-binding domain-like 373 533 IPR018490 -
Stre6g00534 615 CDD CAP-ED 425 524 IPR000595 -
Stre6g00534 615 FunFam Cyclic nucleotide-gated ion channel 1 374 438 - -
Stre6g00534 615 MobiDBLite consensus disorder prediction 12 39 - -
Stre6g00534 615 Gene3D Helix hairpin bin 372 438 - -
Stre6g00534 615 ProSiteProfiles cAMP-cGMP binding motif profile. 445 528 IPR000595 -
Stre6g00534 615 SUPERFAMILY Voltage-gated potassium channels 45 368 - -
Stre6g00534 615 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 37 445 - -
Stre6g00534 615 Gene3D Jelly Rolls 443 548 IPR014710 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre6g00534 K05391 cyclic nucleotide gated channel, plant
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr3:32868890 Stre6g00534 Stre-Chr6:14662790 dispersed
Stre Stre-Chr6:14662790 Stre6g01524 Stre-Chr6:68001625 dispersed
Stre Stre-Chr2:141599845 Stre6g00534 Stre-Chr6:14662790 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Stre9g01241 . 43 829 Ion Channels gene family AT3G07520 36.409 2.45e-164 497.0
Stre9g02083 . 2 717 Ion Channels gene family AT5G57940 63.003 0.0 957.0
Stre9g02923 . 23 783 Ion Channels gene family AT5G11210 29.404 2.70e-101 330.0
Stre9g02436 . 476 730 Ion Channels gene family AT4G03560 51.373 1.13e-76 251.0
Stre9g02991 . 83 776 Ion Channels gene family AT5G11210 30.127 2.72e-96 313.0
Stre9g02009 . 18 846 Ion Channels gene family AT2G29120 36.098 9.06e-156 480.0
Stre9g02926 . 680 829 Ion Channels gene family AT2G17260 27.632 2.11e-13 65.1
Stre9g02921 . 37 875 Ion Channels gene family AT2G29120 28.223 3.56e-99 328.0
Stre9g01263 . 7 856 Ion Channels gene family AT2G26650 68.256 0.0 1218.0
Stre9g01301 . 1 717 Ion Channels gene family AT5G57940 74.966 0.0 1120.0
Stre9g02445 . 30 639 Ion Channels gene family AT4G35290 59.508 0.0 758.0
Stre9g02007 . 1 846 Ion Channels gene family AT2G29120 34.758 7.40e-157 483.0
Stre9g02865 . 58 932 Ion Channels gene family AT1G05200 65.119 0.0 1212.0
Stre9g02881 . 58 932 Ion Channels gene family AT1G05200 65.232 0.0 1212.0
Stre9g02562 . 70 738 Ion Channels gene family AT3G02850 63.827 0.0 914.0
Stre9g02927 . 94 568 Ion Channels gene family AT2G29120 31.006 1.77e-73 248.0
Stre9g02922 . 26 774 Ion Channels gene family AT5G11210 28.175 3.64e-79 268.0
Stre9g01297 . 1 717 Ion Channels gene family AT5G57940 74.966 0.0 1120.0
Stre9g02990 . 23 774 Ion Channels gene family AT5G11210 32.549 5.47e-127 399.0
Stre9g02683 . 5 795 Ion Channels gene family AT4G22200 64.226 0.0 1053.0
Stre9g02989 . 23 783 Ion Channels gene family AT5G11210 28.426 1.16e-92 308.0
Stre9g02925 . 150 838 Ion Channels gene family AT2G29100 27.699 4.89e-72 248.0
Stre9g02986 . 10 846 Ion Channels gene family AT2G29110 29.577 3.90e-99 328.0
Stre9g02008 . 180 470 Ion Channels gene family AT2G24720 29.87 7.62e-27 108.0
Stre9g01689 . 15 901 Ion Channels gene family AT2G32400 52.472 0.0 979.0
Stre9g01690 . 56 932 Ion Channels gene family AT1G05200 63.258 0.0 1170.0
Stre9g01271 WGDA 7 856 Ion Channels gene family AT2G26650 67.586 0.0 1214.0
Stre1g04613 . 61 819 Ion Channels gene family AT3G07520 38.889 0.0 554.0
Stre1g02850 . 43 825 Ion Channels gene family AT3G07520 38.678 0.0 564.0
Stre1g02849 . 40 816 Ion Channels gene family AT5G48410 38.622 0.0 553.0
Stre1g03354 . 16 827 Ion Channels gene family AT3G02850 69.816 0.0 1220.0
Stre1g02860 . 43 825 Ion Channels gene family AT3G07520 38.678 0.0 564.0
Stre1g04664 . 57 830 Ion Channels gene family AT3G07520 36.679 2.48e-162 493.0
Stre1g04008 . 13 431 Ion Channels gene family AT4G18160 63.208 0.0 511.0
Stre1g03994 . 13 431 Ion Channels gene family AT4G18160 60.142 2.93e-163 464.0
Stre1g00048 . 4 857 Ion Channels gene family AT2G26650 57.208 0.0 1024.0
Stre1g01147 . 23 824 Ion Channels gene family AT3G02850 66.543 0.0 1124.0
Stre1g04614 . 491 830 Ion Channels gene family AT3G07520 36.571 9.54e-65 219.0
Stre1g01168 . 23 584 Ion Channels gene family AT3G02850 69.982 0.0 835.0
Stre1g02854 . 43 825 Ion Channels gene family AT3G07520 38.8 0.0 563.0
Stre1g01299 . 26 888 Ion Channels gene family AT3G51480 60.759 0.0 1123.0
Stre10g00858 . 56 931 Ion Channels gene family AT1G05200 58.844 0.0 1103.0
Stre10g01506 . 3 855 Ion Channels gene family AT2G26650 56.128 0.0 998.0
Stre10g01086 . 1 725 Ion Channels gene family AT2G24610 65.312 0.0 981.0
Stre10g01876 . 29 661 Ion Channels gene family AT4G32650 60.312 0.0 764.0
Stre10g02804 . 51 639 Ion Channels gene family AT2G28260 58.065 0.0 726.0
Stre10g00064 . 1 716 Ion Channels gene family AT5G53130 57.895 0.0 807.0
Stre10g00006 . 1 716 Ion Channels gene family AT5G53130 62.136 0.0 900.0
Stre11g02237 ACH,WGDA 132 677 Ion Channels gene family AT5G46240 52.588 0.0 615.0
Stre11g02910 ACH 7 856 Ion Channels gene family AT2G26650 68.366 0.0 1215.0
Stre4g00976 . 7 431 Ion Channels gene family AT4G18160 55.102 1.09e-149 430.0
Stre4g01418 . 26 699 Ion Channels gene family AT5G14870 68.142 0.0 965.0
Stre4g01062 . 23 897 Ion Channels gene family AT3G51480 57.452 0.0 1063.0
Stre4g01294 . 2 778 Ion Channels gene family AT3G27170 73.65 0.0 1152.0
Stre4g01303 WGDA 130 697 Ion Channels gene family AT3G27170 77.856 0.0 907.0
Stre4g02506 ACH 304 823 Ion Channels gene family AT2G26650 60.64 0.0 620.0
Stre4g01293 . 2 632 Ion Channels gene family AT3G27170 77.445 0.0 998.0
Stre4g00405 . 43 704 Ion Channels gene family AT3G48010 60.72 0.0 837.0
Stre4g01437 . 21 666 Ion Channels gene family AT5G14870 68.462 0.0 935.0
Stre4g01787 . 57 352 Ion Channels gene family AT5G55630 49.164 4.52e-103 305.0
Stre4g00941 . 7 431 Ion Channels gene family AT4G18160 57.596 1.31e-161 461.0
Stre2g03848 . 80 692 Ion Channels gene family AT5G54250 76.873 0.0 977.0
Stre2g02313 . 11 700 Ion Channels gene family AT5G14870 60.375 0.0 859.0
Stre2g01433 . 75 357 Ion Channels gene family AT5G55630 52.65 1.18e-116 339.0
Stre2g00835 . 39 662 Ion Channels gene family AT4G32650 58.28 0.0 730.0
Stre2g03236 . 48 548 Ion Channels gene family AT5G15410 74.455 0.0 737.0
Stre2g03006 . 1 791 Ion Channels gene family AT5G26240 80.4 0.0 1214.0
Stre2g05869 . 38 887 Ion Channels gene family AT2G29120 38.78 0.0 600.0
Stre2g05870 . 38 864 Ion Channels gene family AT2G29120 40.78 0.0 646.0
Stre2g05365 . 4 871 Ion Channels gene family AT2G29120 41.422 0.0 664.0
Stre2g03149 . 8 779 Ion Channels gene family AT5G49890 76.684 0.0 1154.0
Stre2g02930 . 453 533 Ion Channels gene family AT5G11180 30.588 2.13e-08 50.4
Stre2g02622 . 8 591 Ion Channels gene family AT3G17700 55.312 0.0 610.0
Stre2g05400 . 32 844 Ion Channels gene family AT2G29100 29.917 6.68e-114 369.0
Stre2g02856 . 775 850 Ion Channels gene family AT1G42540 43.038 2.26e-15 70.1
Stre2g02927 . 384 772 Ion Channels gene family AT5G11210 34.005 4.66e-54 192.0
Stre2g05873 . 15 869 Ion Channels gene family AT2G29110 40.664 0.0 637.0
Stre2g02600 . 8 745 Ion Channels gene family AT3G17700 56.417 0.0 796.0
Stre2g04454 WGDA 1 774 Ion Channels gene family AT3G27170 74.198 0.0 1183.0
Stre2g05867 . 91 868 Ion Channels gene family AT2G29110 39.07 0.0 556.0
Stre2g02938 . 384 772 Ion Channels gene family AT5G11210 34.005 6.51e-54 192.0
Stre8g00654 . 651 845 Ion Channels gene family AT3G07520 35.784 3.02e-24 98.2
Stre8g00652 . 436 814 Ion Channels gene family AT5G48410 43.445 2.16e-96 305.0
Stre8g00233 . 79 404 Ion Channels gene family AT4G01840 63.142 2.35e-144 414.0
Stre3g01434 . 496 873 Ion Channels gene family AT2G17260 35.309 9.44e-61 211.0
Stre3g01439 . 383 746 Ion Channels gene family AT5G11210 31.117 1.23e-54 192.0
Stre3g02576 . 1 529 Ion Channels gene family AT2G28260 71.723 0.0 820.0
Stre3g00466 . 34 873 Ion Channels gene family AT2G29120 43.176 0.0 672.0
Stre3g01031 ACH 61 358 Ion Channels gene family AT5G55630 52.685 1.11e-109 323.0
Stre3g00908 . 60 725 Ion Channels gene family AT2G24610 62.819 0.0 862.0
Stre3g01486 . 535 713 Ion Channels gene family AT5G37500 31.148 1.90e-12 68.6
Stre3g01438 . 496 873 Ion Channels gene family AT2G17260 32.474 2.20e-54 193.0
Stre3g02241 . 54 726 Ion Channels gene family AT5G15410 54.891 0.0 715.0
Stre3g01329 . 231 726 Ion Channels gene family AT5G15410 67.6 0.0 657.0
Stre3g01331 . 46 726 Ion Channels gene family AT5G15410 63.411 0.0 832.0
Stre3g01327 . 462 529 Ion Channels gene family AT5G15410 72.059 4.88e-29 109.0
Stre3g01421 . 441 808 Ion Channels gene family AT2G29110 35.079 1.77e-54 193.0
Stre5g01660 WGDA 548 715 Ion Channels gene family AT2G25600 33.529 1.65e-12 63.9
Stre5g03110 . 5 717 Ion Channels gene family AT5G57940 72.74 0.0 1066.0
Stre5g02827 . 90 872 Ion Channels gene family AT5G27100 28.237 2.27e-87 295.0
Stre5g02959 . 37 884 Ion Channels gene family AT2G29120 43.82 0.0 740.0
Stre5g02330 ACH 61 358 Ion Channels gene family AT5G55630 54.362 3.52e-115 337.0
Stre5g01912 . 1 636 Ion Channels gene family AT2G28260 74.303 0.0 1013.0
Stre5g00198 . 4 730 Ion Channels gene family AT4G03560 66.437 0.0 1020.0
Stre5g00153 . 602 726 Ion Channels gene family AT2G25600 30.0 1.63e-06 49.7
Stre5g00201 . 212 730 Ion Channels gene family AT4G03560 69.364 0.0 762.0
Stre5g02958 . 16 893 Ion Channels gene family AT2G29120 40.022 0.0 673.0
Stre5g01671 WGDA 548 715 Ion Channels gene family AT2G25600 33.529 1.75e-12 63.9
Stre7g01456 . 1 636 Ion Channels gene family AT2G28260 74.303 0.0 1013.0
Stre7g02299 . 1 716 Ion Channels gene family AT5G53130 74.827 0.0 1095.0
Stre7g02781 . 30 351 Ion Channels gene family AT2G28260 46.13 2.73e-107 326.0
Stre7g01384 . 4 780 Ion Channels gene family AT1G42540 65.513 0.0 1073.0
Stre7g02817 . 548 727 Ion Channels gene family AT4G32500 31.373 1.20e-17 84.7
Stre7g01929 . 23 888 Ion Channels gene family AT3G51480 59.289 0.0 1107.0
Stre6g01534 . 439 833 Ion Channels gene family AT2G29110 33.578 4.34e-62 216.0
Stre6g01444 . 507 713 Ion Channels gene family AT5G37500 29.384 5.61e-12 67.0
Stre6g00534 . 80 692 Ion Channels gene family AT5G54250 69.657 0.0 867.0
Stre6g01535 . 446 833 Ion Channels gene family AT2G29110 32.918 1.48e-61 213.0
Stre6g02778 WGDA 5 677 Ion Channels gene family AT5G46240 54.873 0.0 782.0
Stre6g01376 ACH,WGDA 7 857 Ion Channels gene family AT2G26650 67.349 0.0 1224.0
Stre6g02768 WGDA 5 677 Ion Channels gene family AT5G46240 55.407 0.0 797.0
Stre6g01524 . 1 719 Ion Channels gene family AT4G30360 66.262 0.0 987.0
Stre6g00888 ACH 68 358 Ion Channels gene family AT5G55630 64.605 6.16e-141 402.0