AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre6g00681 ATGAACATCGAAATCTTTGGTAGACATGCGCTTCTCTTCGACGATGATACCTCCGCAGCCTTCGTTAACTCAGACGACGCACTTGTGGAATGGAATTCTCTGTTAATCGACCGTTACGACGTCCGACATCTCCTTTCCGGCCCTCCGCCGTCACGGCGGCGGCGCAATCCGCAAGCATCGCAGTTATCTTCCGCCGATGCGGATCTTGATTATGAACGGTACCTGGATCTACCCCCACCGTCGGAGGAAGATGAAACAGATGCGAATTCAGAACCCGTAGGTGCATTTAATGCTGTACCTTTTTCTTATGAAAATGAAAAGGATTCTAACGATCAAAAGACTGTTGATACAGAACCAGAAGTTCCTAAATTTCAACCCCCCTTTTCTGTACCTGACAACCTTGTTCAAAACTTGCCTCCTACGGAGAAAGTACATCAGATTATTGCAAGAACTGCTCTTTTTGTAATTAAAAATGGAGGTCAATCAGAGATTATCTTAAGAGTGAAGCAAGGAGACAACCCGACTTTTGGATTCCTAATGCCAGATCATCACCTACATCCGTATTTCAGGTTTCTAGTTGACAATCAGAATCTTTTACATTCAAAAGACAACGGGCAACCTGAAAATGAGGAAAAATCATCAAATGTCGGAGCATTGTCTTTACTTGGTTCTGTTTATGGCACCGGTGAAGATGATGATGGTGGAAATGAACATCCACCACCACCACTACCACCACCATCATCATCATCATCATCATTATCAGCATCATCATTATCATCATCATTATCAACATCTAAAGAATCTATCAATGTAGATGCTACAGTTTCTCTTACAGTTGGGAAAACAATGCTGCAATCTGACATAGACGAGATTATTAAAAAAAAGAATTTATTGTTAAACGGATTGAAAGATGAAAGAACGAGTGTTGTTAAAAAAGGCGAGTTTTCAGGCTCGATATCTTCTGTTCCTGATAAGTCACGTGCTTCTTCTTTACCTCCAATTCTCAAAACTGAAATGATGCTTGTGGACCCACCGTCTGAGATGAAACGGTTGGTTGAGAAGATAGTGGAATTTATTATAAAAAACGGGAGGCAATTTGAGACTGTACTTATGGAGCAAGACCGTGGTCATGGAAGATTCCCTTTTTTAATCCCGTCTAATATATTCCATCCTTACTATTTGAAAGTTCTCCAGAAAGCCCAAGAGCCGAAATTAACCGTCAAAAGTTCTCATAACGAGAAAGAAGATTTCAGAGGACATATAAAGAAAAAGTCTATCTCGAGGGAGAATGAGAATAAAATGATGGAATCTGATGAGATACCACTTGATTCCGAAAGGAAAGAGAAGTTTAAGATGGTAATTAACAAGTCTAAAAAGGAAGGATCAGATTTGCCAGCTAAAGCCACACAATCGCCACCTGGCGTCCAGGTGGATGCTGACCAAGCAGCAGCCATTCTTCAAGCTGCCACTAGAGGTATTAAACCTTCAAGTTTAGGAATATTGTTTGGTCAACCGTCTAATGAAGACAGTTCATCTGGGTCAGACTTGACTCATGAGCAGAAACTTAAGGCTGAGAGGCTGAAACGAGCCAAGTTGTTTGTGGCTCAGCTGAAAAGCGGGTCGGCTCCTTTGAAAGCCGGACCCTCACGCGGCTCGTCAGCTGAGCCGCTAGCTCGATCATCAGCTGAGCCACAAGCTGACAATCGCCTTGAAGCAAAAGAAACCGCAAAAGAAACCGAGAAGACAACGTCTGATATTATTCTAAAATCAGCAAAAGAACATTTGAATGAGGAAAAACGAGCAATGCGAAAATACCGAGCTCGTTCAGACAAAAAAGACGACGATGATGATGGTGATCATGATGATGATGATCATCGTCATCATGATGAACTTGTTGACAATGACGATGATGAGAGAGAAAGAAAACGGTCACATAGACACCATAGGAAGAAACACCGATCTCATTCAGTTGAAGAAGAGAGAGAAGAAAAATACTCAGATGAGAAAGATGATAAACATGCGAAAAGAAGACATCGATCGCATCGTTCGTCTCATAAACATGACGATGATGACGAAATCACTGAAGAAATGGATCGAATGTATTCAAGAAAGAAGAAGCATCGATTTTCTAGCTCTTATGAACACGATGAACACGAGAGTGAACATGAATATTCTAGAAAGAAACACCGATCACATCATTCTTCACATGATGAAGCCGACAGTGACGATAAACATTCTAGAAAAAAACGAAAACATAGATCTCACAAATCTTCTCATAGGCATAATAAACATAGGAAAAGTCACTCTTCTAGACATAATAAACATAAGCCGGATATGTACTCAGAAGAGGAGTCAAGGGACCAGAATGAGGCAGATAAGAATGTTAAGGGACCAAACCCGGAAAGAGAAGAATTTGAAGACGGTGAGGTTTCAGGTCCGTCAAAACGGGAACCTTCGGTTGATGTGTCAAATTCTTATAATGATCCGACGTCGGTGACTCAGCAATCTGGGACAACTGAGGTTTCTGATGATCTCAGGGCCAAAATCAGAGCAATGCTGATGTCAACAATGTAA 2574 41.41 MNIEIFGRHALLFDDDTSAAFVNSDDALVEWNSLLIDRYDVRHLLSGPPPSRRRRNPQASQLSSADADLDYERYLDLPPPSEEDETDANSEPVGAFNAVPFSYENEKDSNDQKTVDTEPEVPKFQPPFSVPDNLVQNLPPTEKVHQIIARTALFVIKNGGQSEIILRVKQGDNPTFGFLMPDHHLHPYFRFLVDNQNLLHSKDNGQPENEEKSSNVGALSLLGSVYGTGEDDDGGNEHPPPPLPPPSSSSSSLSASSLSSSLSTSKESINVDATVSLTVGKTMLQSDIDEIIKKKNLLLNGLKDERTSVVKKGEFSGSISSVPDKSRASSLPPILKTEMMLVDPPSEMKRLVEKIVEFIIKNGRQFETVLMEQDRGHGRFPFLIPSNIFHPYYLKVLQKAQEPKLTVKSSHNEKEDFRGHIKKKSISRENENKMMESDEIPLDSERKEKFKMVINKSKKEGSDLPAKATQSPPGVQVDADQAAAILQAATRGIKPSSLGILFGQPSNEDSSSGSDLTHEQKLKAERLKRAKLFVAQLKSGSAPLKAGPSRGSSAEPLARSSAEPQADNRLEAKETAKETEKTTSDIILKSAKEHLNEEKRAMRKYRARSDKKDDDDDGDHDDDDHRHHDELVDNDDDERERKRSHRHHRKKHRSHSVEEEREEKYSDEKDDKHAKRRHRSHRSSHKHDDDDEITEEMDRMYSRKKKHRFSSSYEHDEHESEHEYSRKKHRSHHSSHDEADSDDKHSRKKRKHRSHKSSHRHNKHRKSHSSRHNKHKPDMYSEEESRDQNEADKNVKGPNPEREEFEDGEVSGPSKREPSVDVSNSYNDPTSVTQQSGTTEVSDDLRAKIRAMLMSTM 857
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre6g00681 857 MobiDBLite consensus disorder prediction 655 674 - -
Stre6g00681 857 MobiDBLite consensus disorder prediction 225 259 - -
Stre6g00681 857 MobiDBLite consensus disorder prediction 500 520 - -
Stre6g00681 857 MobiDBLite consensus disorder prediction 774 814 - -
Stre6g00681 857 MobiDBLite consensus disorder prediction 538 845 - -
Stre6g00681 857 MobiDBLite consensus disorder prediction 817 842 - -
Stre6g00681 857 SUPERFAMILY Surp module (SWAP domain) 323 398 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Stre6g00681 857 SMART DRY-EERY-2 1 107 IPR019147 -
Stre6g00681 857 Gene3D Surp module 140 195 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Stre6g00681 857 Coils Coil 588 608 - -
Stre6g00681 857 MobiDBLite consensus disorder prediction 684 726 - -
Stre6g00681 857 Pfam Alternative splicing regulator 3 90 IPR019147 -
Stre6g00681 857 ProSiteProfiles SURP motif repeat profile. 351 393 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Stre6g00681 857 ProSiteProfiles SURP motif repeat profile. 147 189 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Stre6g00681 857 PANTHER SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT 3 661 IPR040397 GO:0000395(PANTHER)
Stre6g00681 857 MobiDBLite consensus disorder prediction 746 773 - -
Stre6g00681 857 Pfam Surp module 349 398 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Stre6g00681 857 Pfam Surp module 146 194 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Stre6g00681 857 Gene3D Surp module 336 404 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Stre6g00681 857 SMART surpneu2 349 402 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Stre6g00681 857 SMART surpneu2 145 198 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Stre6g00681 857 SUPERFAMILY Surp module (SWAP domain) 124 194 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Stre6g00681 857 MobiDBLite consensus disorder prediction 45 131 - -
Stre6g00681 857 MobiDBLite consensus disorder prediction 566 642 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre6g00681 - -