AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre6g00694 ATGAACAGTAGTCCTTCTACGCCGATGAATGCAAACGCTCCGTCATCGAGCTCCGGTGGCGCCGGATCGCCGGATTCAAATGCTCCGAGGAGAAATTCCAAGCGACCTAAATATTCTAGGTTTACACAGCAAGAACTTCCAGCATGCAAGCCAATTCTTACCCCTAAATGGGTGATTTCTGCATTTATGCTTGTGACAATTGTCTTCATACCAATAGGATTTACTTCTCTTTTTGCTTCTCGTGATGTAGTTGAAATTGTTTATCGTTATGATAATGTCTGTAGACAAGGCTCAAAAAGTGAAAAGGTCCAATTTATACAATCAGAAGCAACAAATAAAACATGTGAGATAAGCTTGACAGTCATAAAGCGAATGAAGCAGCCTATTTATGTCTACTATCAGCTTGATAATTTCTATCAGAATCATCGCAGATATGTGAAGAGCCGAAGTGATAACCAGTTGAGGAACCTTAATGATGAGGCTGACACAAGTACATGTAAGCCTGAACATGAAGCAAATGGGATGCCAATAGTGCCATGTGGACTTGTAGCATGGAGTTTGTTTAATGACACCTATAGTTTTTCCACCCGTAGCAACAGTCGATTAAACATAAACAAGCGAGAAATTTCATGGAAGAGTGATAGAGATGAAAAGTTTGGAAGTGATGTGTTTCCAAAAAATTTCCAAAACGGTAGTTTGATTGGCGGTGGGCGTCTTAATGAGAGTATCCCGTTAAACCAACAAGAAGACCTTATTGTTTGGATGCGAACCGCTGCACTCCCAACATTTAGGAAACTGTACGGGAAAATTGAGGTGGATATTGAGGCAGGCGAGACGATAAATGTGGTTTTGGAAAACCGTTACAACACTTACAGTTTCAGTGGCAAGAAGAAACTTGTGCTTTCAACTACCAGCTGGCTTGGCGGAAAAAATAACTTTATTGGCATTGCTTATTTGGCGGTTGGTGGCTTGTGCTTCTTACTAGCTACCACTTTCACTATCATATATTTAGTTAAACCAAGGCACCTTGGAGATCCAACATATCTGTCATGGAACCGAAACCCAGGTGGTCACTGA 1077 41.13 MNSSPSTPMNANAPSSSSGGAGSPDSNAPRRNSKRPKYSRFTQQELPACKPILTPKWVISAFMLVTIVFIPIGFTSLFASRDVVEIVYRYDNVCRQGSKSEKVQFIQSEATNKTCEISLTVIKRMKQPIYVYYQLDNFYQNHRRYVKSRSDNQLRNLNDEADTSTCKPEHEANGMPIVPCGLVAWSLFNDTYSFSTRSNSRLNINKREISWKSDRDEKFGSDVFPKNFQNGSLIGGGRLNESIPLNQQEDLIVWMRTAALPTFRKLYGKIEVDIEAGETINVVLENRYNTYSFSGKKKLVLSTTSWLGGKNNFIGIAYLAVGGLCFLLATTFTIIYLVKPRHLGDPTYLSWNRNPGGH 358
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre6g00694 358 PIRSF Lem3-Cdc50 7 354 IPR005045 GO:0016020(InterPro)
Stre6g00694 358 MobiDBLite consensus disorder prediction 1 29 - -
Stre6g00694 358 Pfam LEM3 (ligand-effect modulator 3) family - CDC50 family 77 341 IPR005045 GO:0016020(InterPro)
Stre6g00694 358 PANTHER CELL CYCLE CONTROL PROTEIN 50 29 350 IPR005045 GO:0005783(PANTHER)|GO:0005794(PANTHER)|GO:0005886(PANTHER)|GO:0016020(InterPro)
Stre6g00694 358 MobiDBLite consensus disorder prediction 1 40 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre6g00694 K26935 cell cycle control protein 50
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Event-related genes

Select Gene_1 Gene_2 Event_name
159752 Stre2g04050 Stre6g00694
160034 Stre3g00992 Stre6g00694
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr5:1236284 Stre6g00694 Stre-Chr6:20210364 dispersed
Stre Stre-Chr1:113663457 Stre6g00694 Stre-Chr6:20210364 transposed
Stre Stre-Chr1:124820609 Stre6g00694 Stre-Chr6:20210364 transposed
Stre Stre-Chr2:145754302 Stre6g00694 Stre-Chr6:20210364 wgd
Stre Stre-Chr3:13064678 Stre6g00694 Stre-Chr6:20210364 wgd