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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre6g00696 ATGGTAGCCGTTAAGGGATTGAACACGTTCAAGACTAGGGTTTCAGGAGAACGAGAGACCAGGAAAAGTGGTGCATTCAGAAGTTTGAAGGTGTATACAGAAGATGCCAAGGTTAAGATTAATGATCAGGATCGTGTTGCTGCTGAAACTAAAAGGAAATCTGTTCCAGTCAAAGCTGAATCCAGTCATATCAATGCCAATTGTCAAAAGGAGGCCCTCAACAAGTTGGATAAGATTAATAGGAAAAACATCAAATCTGATCAAGTGAAAGTAGGAAGAAAAGTATTGGCAGATATAAGCAATTCACAGGGTGTTTTTCAGAAGAATGCAACTGTTGGTGGCTCCAAACCTTCGAAAGGTAAAACAGAAAGGATGACATATTCACAACGGACCTCAGTTTCATCAGGCAAGGATCTGAAAGTCTTCAATGGTAATTCAAAGACAACGGGTCAAGAAACTGTTAGTTATGTAACAAGGCCCTCAGTTTCATCAGGAAATGATCTGAAAGTCTTTAATGGTAATTTGAAGAAAAAGGGTCAAGAAACCACTGGTTATGTAACAAGGAAATCTGCAACGAATTATTGCCCGCCACAAAGGAAATCTTTACCAGTTTTCAAGCAAGTTTACAAGGGGGAGAAATCTGATATCAGTAAAGGAAATATAGATAATAAGTTGAAGAACAAGGATAAACATGGCTTCTCAGTTAAATTGAAAGTTGGCACGACGATTGTACCGCAAGTAAACAATACACGTGGTCACCGTTTGAAGAATAGAGTTAGTGATGGATGTATAAAAATGGCATCACAACCGACACGGGACAAACAGAGAATGTCAAGGATATCAATAAAGCCAACGATTAAAACGACAGTTGGTATTCCTAAAGCTCAAAGGGTATCAAGAACCACTTCTGTTTTCACCAAATCAACTTCTGTTTTCTCCAAGAAAACTGATAATTCATCAAAGTCTGAATCTATTTCCTGCGAGCAAATTGCACAAAGTGTGACATTTGATGCAAGTACATCACAACTCACTGTCAAAGGGAAATCTGGTCGCCGAAAATCCTACACATCATTGCTAATCGAGAGAACAAAGCTTCTCAAAGATCAGTTTAGTGACACCAAAGAGGAGAAACTACCTAACATTGATGATGATAGTAATCAACTTGAAGTTGCTGAATATGTTGATGAGATTTATCAGCATTATTGGGTCACAGAAGCAAATAATCTACCACTGAAGAACTACCTGGAGATCCAAACAGATATCAATCATCAAATGCGAGGCATAATGATTAACTGGCTAATAGAAGTACATCTGAAATTTGATTTAATGCAAGAAACACTTTATCTGATGGTCACAATCTTTGACTTTTACTTGTCTACTGTCGCAATTAAAAGAAATGAAATGCAATTAGTTGGTCTCACATCACTATTACTAGCATCAAAGTATGAGGATTTTTGGCATCCAAGGGTTGTGGAATTAGTAAGTATCTCAGCAGAGACATACACAACAGCGCAAATGCTTGCAATGGAGAAGACGATTTTAACGACGTTAGACTACCGTCTTAATTTTGCTACACCTTATGTGTTCATGCTGAGATTTCTTAAAGCTGCACAAGGGGGCAAAAAGTTTGAAAACCTAGCTTTCTACCTAATTGAGCTGTGTTTGGTGGAATATGATGCTTTAAATTACAAACCATCATTACTATGTGCATCAGCAATCTATGTTGCTAGATGTACCATGAATTTGTCCCCAACATGGACCCCACTTCTATGCAAACATTCTAAGTACCAAGAATTTCAGTTAAGGGATTGTGCTGAAATGATTTTAGGATTTCACCAAGCTACAAAAAAATCACTTTTGAAAGTGACATATGACAAATACACAACCAGTAAAAACTGCAAAGTTGCTTTAATCAAGGCTCTGGACAAACTTCCACCTCCATGA 1944 37.71 MVAVKGLNTFKTRVSGERETRKSGAFRSLKVYTEDAKVKINDQDRVAAETKRKSVPVKAESSHINANCQKEALNKLDKINRKNIKSDQVKVGRKVLADISNSQGVFQKNATVGGSKPSKGKTERMTYSQRTSVSSGKDLKVFNGNSKTTGQETVSYVTRPSVSSGNDLKVFNGNLKKKGQETTGYVTRKSATNYCPPQRKSLPVFKQVYKGEKSDISKGNIDNKLKNKDKHGFSVKLKVGTTIVPQVNNTRGHRLKNRVSDGCIKMASQPTRDKQRMSRISIKPTIKTTVGIPKAQRVSRTTSVFTKSTSVFSKKTDNSSKSESISCEQIAQSVTFDASTSQLTVKGKSGRRKSYTSLLIERTKLLKDQFSDTKEEKLPNIDDDSNQLEVAEYVDEIYQHYWVTEANNLPLKNYLEIQTDINHQMRGIMINWLIEVHLKFDLMQETLYLMVTIFDFYLSTVAIKRNEMQLVGLTSLLLASKYEDFWHPRVVELVSISAETYTTAQMLAMEKTILTTLDYRLNFATPYVFMLRFLKAAQGGKKFENLAFYLIELCLVEYDALNYKPSLLCASAIYVARCTMNLSPTWTPLLCKHSKYQEFQLRDCAEMILGFHQATKKSLLKVTYDKYTTSKNCKVALIKALDKLPPP 647
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre6g00696 647 CDD CYCLIN-CCNB1-like-rpt1 390 519 - -
Stre6g00696 647 SUPERFAMILY Cyclin-like 386 522 IPR036915 -
Stre6g00696 647 FunFam Cyclin N-terminal domain containing 2 411 519 - -
Stre6g00696 647 Gene3D - 411 515 - -
Stre6g00696 647 FunFam putative cyclin-B3-1 isoform X3 520 645 - -
Stre6g00696 647 SUPERFAMILY Cyclin-like 525 643 IPR036915 -
Stre6g00696 647 SMART Cyclin-C-2 524 641 IPR004367 -
Stre6g00696 647 Gene3D - 516 644 - -
Stre6g00696 647 SMART cyclin-7 528 610 IPR013763 -
Stre6g00696 647 SMART cyclin-7 431 515 IPR013763 -
Stre6g00696 647 MobiDBLite consensus disorder prediction 108 145 - -
Stre6g00696 647 Pfam Cyclin, C-terminal domain 525 639 IPR004367 -
Stre6g00696 647 PANTHER CYCLINS 375 628 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Stre6g00696 647 Pfam Cyclin, N-terminal domain 396 522 IPR006671 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre6g00696 K21777 G2/mitotic-specific cyclin-B, other
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr6:20282573 Stre9g03148 Stre-Chr9:100296845 dispersed
Stre Stre-Chr6:20282573 Stre7g01372 Stre-Chr7:71611980 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Stre9g02431 . 32 356 Core Cell Cycle gene family AT5G64960 38.663 8.12e-62 209.0
Stre9g00330 . 20 307 Core Cell Cycle gene family AT1G76540 36.207 5.96e-57 189.0
Stre9g00523 . 7 1009 Core Cell Cycle gene family AT3G12280 66.503 0.0 1335.0
Stre9g00421 . 18 351 Core Cell Cycle gene family AT5G10270 50.898 1.22e-113 344.0
Stre9g01763 . 14 282 Core Cell Cycle gene family AT4G34160 48.443 1.77e-90 274.0
Stre9g03148 . 120 354 Core Cell Cycle gene family AT5G43080 56.17 1.16e-97 287.0
Stre9g00004 . 12 497 Core Cell Cycle gene family AT1G02970 56.033 0.0 538.0
Stre9g02653 . 20 312 Core Cell Cycle gene family AT1G76540 34.237 3.70e-55 183.0
Stre9g00206 . 75 184 Core Cell Cycle gene family AT1G20930 36.364 2.95e-08 49.3
Stre9g03201 WGDA 91 195 Core Cell Cycle gene family AT1G49620 44.248 1.38e-22 88.6
Stre9g02432 . 32 356 Core Cell Cycle gene family AT5G64960 38.663 8.12e-62 209.0
Stre9g00824 ACH,WGDA 1 222 Core Cell Cycle gene family AT5G48820 42.259 4.25e-46 151.0
Stre9g01747 . 89 195 Core Cell Cycle gene family AT1G49620 45.082 1.09e-24 94.7
Stre9g01180 . 1 317 Core Cell Cycle gene family AT5G27620 59.875 2.43e-139 395.0
Stre1g01564 . 12 304 Core Cell Cycle gene family AT1G76540 29.773 8.35e-43 150.0
Stre1g04637 ACH 67 259 Core Cell Cycle gene family AT5G27620 23.762 1.73e-09 55.5
Stre1g03295 ACH 35 429 Core Cell Cycle gene family AT1G20610 56.281 3.58e-152 436.0
Stre1g01545 WGDA 7 308 Core Cell Cycle gene family AT4G37630 35.526 2.97e-50 167.0
Stre1g04274 . 2 309 Core Cell Cycle gene family AT3G54180 78.571 0.0 508.0
Stre1g02335 . 2 273 Core Cell Cycle gene family AT5G02110 28.571 4.42e-35 129.0
Stre1g01551 WGDA 12 304 Core Cell Cycle gene family AT1G76540 31.31 6.50e-42 148.0
Stre1g01330 . 4 429 Core Cell Cycle gene family AT1G20610 46.991 8.30e-128 372.0
Stre1g02349 . 1 435 Core Cell Cycle gene family AT5G06150 52.146 5.07e-152 437.0
Stre1g04288 . 39 309 Core Cell Cycle gene family AT3G54180 77.86 1.44e-160 446.0
Stre1g00671 ACH 1 220 Core Cell Cycle gene family AT5G48820 43.568 4.65e-44 145.0
Stre1g01313 ACH 4 429 Core Cell Cycle gene family AT1G20610 50.463 8.15e-150 429.0
Stre1g01571 . 7 308 Core Cell Cycle gene family AT4G37630 35.669 7.40e-51 169.0
Stre1g01884 . 10 290 Core Cell Cycle gene family AT3G48750 35.274 1.13e-54 180.0
Stre1g03654 . 18 470 Core Cell Cycle gene family AT5G63610 75.536 0.0 706.0
Stre1g04581 ACH 1 221 Core Cell Cycle gene family AT5G48820 38.75 2.84e-36 125.0
Stre10g01890 . 3 301 Core Cell Cycle gene family AT3G54180 28.53 2.58e-28 111.0
Stre10g01308 . 20 459 Core Cell Cycle gene family AT1G44110 60.087 0.0 536.0
Stre10g01954 . 3 301 Core Cell Cycle gene family AT3G54180 28.53 2.32e-28 111.0
Stre10g01039 . 1 290 Core Cell Cycle gene family AT3G48750 37.415 1.22e-66 213.0
Stre10g01866 WGDA 1 434 Core Cell Cycle gene family AT5G25380 47.899 1.26e-137 401.0
Stre10g00248 . 204 287 Core Cell Cycle gene family AT5G43080 59.524 2.12e-33 115.0
Stre10g02224 ACH 1 220 Core Cell Cycle gene family AT5G48820 43.038 8.31e-46 150.0
Stre11g00852 . 5 291 Core Cell Cycle gene family AT3G48750 70.035 1.55e-143 402.0
Stre11g01439 . 15 348 Core Cell Cycle gene family AT5G67260 43.966 1.28e-91 277.0
Stre11g00113 . 12 338 Core Cell Cycle gene family AT1G70210 58.788 1.58e-126 363.0
Stre11g00468 WGDA 186 392 Core Cell Cycle gene family AT1G20610 28.704 1.48e-20 92.4
Stre11g00809 . 1 288 Core Cell Cycle gene family AT3G48750 69.444 2.13e-140 394.0
Stre11g00102 WGDA 12 338 Core Cell Cycle gene family AT1G70210 58.485 1.14e-125 362.0
Stre11g01420 ACH 15 348 Core Cell Cycle gene family AT5G67260 45.272 3.08e-93 281.0
Stre11g01556 . 74 167 Core Cell Cycle gene family AT1G20930 36.17 2.06e-12 62.4
Stre11g00804 . 91 219 Core Cell Cycle gene family AT3G48750 80.62 1.08e-79 235.0
Stre4g02012 ACH 1 353 Core Cell Cycle gene family AT5G43080 55.586 2.58e-143 409.0
Stre4g02469 . 18 357 Core Cell Cycle gene family AT5G10270 51.906 8.20e-116 352.0
Stre4g01480 . 44 353 Core Cell Cycle gene family AT5G43080 49.038 1.17e-103 305.0
Stre4g01778 ACH,WGDA 62 367 Core Cell Cycle gene family AT5G67260 48.113 3.33e-97 291.0
Stre4g01573 . 18 357 Core Cell Cycle gene family AT5G10270 45.882 5.56e-99 308.0
Stre4g00851 . 1 294 Core Cell Cycle gene family AT3G48750 86.395 0.0 536.0
Stre4g02026 WGDA 18 286 Core Cell Cycle gene family AT4G34160 47.703 4.32e-81 249.0
Stre4g02608 . 19 459 Core Cell Cycle gene family AT1G80370 51.339 2.18e-140 408.0
Stre4g00836 . 1 294 Core Cell Cycle gene family AT3G48750 86.395 0.0 536.0
Stre4g01718 . 149 195 Core Cell Cycle gene family AT1G49620 61.702 5.68e-17 73.9
Stre2g03176 . 18 376 Core Cell Cycle gene family AT5G10270 49.448 2.23e-114 352.0
Stre2g03182 . 20 312 Core Cell Cycle gene family AT1G76540 34.576 1.33e-55 184.0
Stre2g05748 WGDA 64 338 Core Cell Cycle gene family AT2G22490 48.029 1.56e-76 237.0
Stre2g04619 ACH,WGDA 1 367 Core Cell Cycle gene family AT5G67260 42.67 1.86e-94 285.0
Stre2g02289 . 18 367 Core Cell Cycle gene family AT5G10270 48.442 3.86e-111 339.0
Stre2g04398 . 14 388 Core Cell Cycle gene family AT5G64960 42.487 3.12e-97 304.0
Stre2g05098 . 21 333 Core Cell Cycle gene family AT5G10270 46.875 5.15e-88 280.0
Stre2g00479 . 18 366 Core Cell Cycle gene family AT5G10270 50.716 4.76e-117 356.0
Stre2g06152 . 18 357 Core Cell Cycle gene family AT5G10270 51.906 2.41e-116 353.0
Stre2g05390 . 7 296 Core Cell Cycle gene family AT4G37630 30.333 2.15e-31 117.0
Stre2g05827 . 21 380 Core Cell Cycle gene family AT5G10270 45.232 1.37e-100 313.0
Stre2g00891 . 3 434 Core Cell Cycle gene family AT5G25380 48.832 6.32e-130 383.0
Stre2g00504 . 18 366 Core Cell Cycle gene family AT5G10270 50.716 5.41e-117 355.0
Stre2g05060 . 19 333 Core Cell Cycle gene family AT5G10270 46.584 1.48e-88 276.0
Stre2g05769 . 64 338 Core Cell Cycle gene family AT2G22490 47.312 6.14e-75 233.0
Stre2g02251 ACH 1 353 Core Cell Cycle gene family AT5G43080 57.796 2.16e-151 429.0
Stre2g02286 . 18 360 Core Cell Cycle gene family AT5G64960 37.101 6.33e-68 224.0
Stre2g00922 . 18 363 Core Cell Cycle gene family AT5G10270 51.009 2.20e-119 360.0
Stre2g04151 . 18 363 Core Cell Cycle gene family AT5G10270 51.873 5.23e-118 357.0
Stre2g04826 . 63 344 Core Cell Cycle gene family AT5G67260 46.897 1.81e-78 243.0
Stre2g04814 WGDA 63 344 Core Cell Cycle gene family AT5G67260 46.552 6.20e-78 241.0
Stre8g00223 . 6 391 Core Cell Cycle gene family AT1G18040 76.471 0.0 597.0
Stre8g01552 . 18 357 Core Cell Cycle gene family AT5G10270 47.23 7.90e-102 318.0
Stre8g03022 . 20 290 Core Cell Cycle gene family AT1G66750 29.524 3.42e-27 112.0
Stre8g03374 . 11 315 Core Cell Cycle gene family AT1G20930 85.902 0.0 553.0
Stre8g02534 . 17 369 Core Cell Cycle gene family AT5G64960 44.751 2.04e-93 299.0
Stre8g01436 . 62 302 Core Cell Cycle gene family AT5G65420 48.047 1.47e-68 216.0
Stre3g00383 . 3 377 Core Cell Cycle gene family AT2G26760 52.911 9.59e-143 410.0
Stre3g00923 . 18 363 Core Cell Cycle gene family AT5G10270 52.161 9.46e-121 364.0
Stre3g00812 . 76 244 Core Cell Cycle gene family AT5G27620 24.211 1.26e-06 48.5
Stre3g02119 . 176 222 Core Cell Cycle gene family AT5G48820 57.447 1.94e-15 69.7
Stre3g00271 . 96 216 Core Cell Cycle gene family AT5G67260 60.976 2.45e-47 159.0
Stre3g02116 . 176 222 Core Cell Cycle gene family AT5G48820 59.574 4.60e-16 71.6
Stre3g00750 . 19 296 Core Cell Cycle gene family AT1G66750 38.298 2.55e-64 209.0
Stre3g00481 . 2 250 Core Cell Cycle gene family AT4G28980 25.758 2.73e-12 68.6
Stre3g02216 . 18 403 Core Cell Cycle gene family AT5G10270 42.377 9.58e-99 308.0
Stre3g00785 . 76 244 Core Cell Cycle gene family AT5G27620 24.211 1.20e-06 48.5
Stre3g02121 . 176 222 Core Cell Cycle gene family AT5G48820 59.574 5.15e-16 71.2
Stre3g00866 . 3 294 Core Cell Cycle gene family AT3G48750 36.271 4.31e-64 207.0
Stre3g01846 . 14 304 Core Cell Cycle gene family AT1G76540 26.531 4.99e-29 114.0
Stre5g02495 WGDA 42 302 Core Cell Cycle gene family AT5G65420 44.981 9.76e-76 234.0
Stre5g00937 . 142 396 Core Cell Cycle gene family AT1G76310 25.094 4.26e-17 81.6
Stre5g03160 . 46 354 Core Cell Cycle gene family AT5G10270 48.22 1.58e-99 300.0
Stre5g00451 . 8 302 Core Cell Cycle gene family AT3G54180 25.97 2.83e-13 69.3
Stre5g02152 ACH 1 220 Core Cell Cycle gene family AT5G48820 40.586 7.07e-42 140.0
Stre5g01288 WGDA 1 434 Core Cell Cycle gene family AT5G25380 50.105 1.40e-146 424.0
Stre5g01280 WGDA 32 434 Core Cell Cycle gene family AT5G25380 51.345 7.63e-136 396.0
Stre5g00685 . 11 309 Core Cell Cycle gene family AT1G20930 85.953 0.0 551.0
Stre5g02659 . 44 291 Core Cell Cycle gene family AT5G65420 40.441 1.27e-54 182.0
Stre5g02719 WGDA 91 195 Core Cell Cycle gene family AT1G49620 37.5 8.21e-19 79.0
Stre7g01288 . 1 504 Core Cell Cycle gene family AT5G10270 75.816 0.0 755.0
Stre7g02127 WGDA 12 304 Core Cell Cycle gene family AT1G76540 31.31 6.47e-41 145.0
Stre7g01372 . 1 430 Core Cell Cycle gene family AT1G76310 57.143 1.62e-165 469.0
Stre7g00113 WGDA 12 339 Core Cell Cycle gene family AT1G70210 58.754 3.86e-126 362.0
Stre7g02118 WGDA 7 323 Core Cell Cycle gene family AT4G37630 33.742 1.21e-48 163.0
Stre7g01539 . 18 325 Core Cell Cycle gene family AT5G10270 44.984 3.24e-79 256.0
Stre7g00475 WGDA 190 399 Core Cell Cycle gene family AT5G06150 31.839 6.46e-26 108.0
Stre6g00081 . 251 348 Core Cell Cycle gene family AT5G67260 33.645 3.65e-09 51.2
Stre6g00127 . 150 190 Core Cell Cycle gene family AT1G49620 60.87 1.63e-12 61.2
Stre6g02163 ACH 99 273 Core Cell Cycle gene family AT5G27620 27.568 2.49e-12 63.9
Stre6g02715 . 10 290 Core Cell Cycle gene family AT3G48750 35.739 3.89e-56 184.0
Stre6g00494 . 18 379 Core Cell Cycle gene family AT5G10270 52.329 6.68e-121 368.0
Stre6g02192 ACH,WGDA 1 222 Core Cell Cycle gene family AT5G48820 44.167 3.46e-47 154.0
Stre6g00355 . 99 162 Core Cell Cycle gene family AT1G76540 51.562 4.10e-18 74.3
Stre6g00696 . 22 647 Core Cell Cycle gene family AT1G16330 42.349 2.30e-148 442.0
Stre6g03136 . 20 307 Core Cell Cycle gene family AT1G76540 35.862 1.40e-57 190.0