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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre6g00727 ATGGCCTTCATTTCTAAAGTTCACGACTTCTCCGGCGACTTTCAAACTCCGGCAACCACCCTACCAATATGGTATGATGATCCTACTTCATCCTTTTTCTTAGACAAGTATCGGATCACAATGCCATCCGAATATGACATCACTACACCATCTTCATCATGGAAGAATTCATTCCCGGAGAGATTTGGGGTTTCCGAGATGGCGGTTCCGACATCACCAGCCGGATTTAGTAGCATTCTCGGAGAAACCGACTATCGAAAGGTTGAACAAGATGAATATCTTTGTAGCACCGGTGGTTATGGTACCAACTCATGGTCCGCTTATCCCAGTGTCACTAGTAATTGGGAAACCGAGAGCCCAAAAACGTGTAAAGAAGTCGAAGAACCGACATTGAAGATCGGGAGGTATTCCCCTGAAGAAAGGAAGGACAAGATCATGAGATATCTCAAGAAGAGAAATCAAAGGAACTTCAACAAGACCATTAAGTATGAATGCCGAAAGACGTTAGCAGACAAGCGCGTACGAGTGCGAGGGAGGTTTGCGAAGAACAACAACGATCATCATCATCATATTGATCATCATCCTTGTGAAGATCAAGTGCTTCCCGGCATCAACACTGCCATTAATTCTTCAGAAGAAGATCTTCAGCAACTATACATGACCAACAGTTTTCTGATGAAACAAGATTATGATGTTGAGGAAGAATGGTTGCAAGAAGCAATGGCTAGTTTATTGTATTAA 741 42.91 MAFISKVHDFSGDFQTPATTLPIWYDDPTSSFFLDKYRITMPSEYDITTPSSSWKNSFPERFGVSEMAVPTSPAGFSSILGETDYRKVEQDEYLCSTGGYGTNSWSAYPSVTSNWETESPKTCKEVEEPTLKIGRYSPEERKDKIMRYLKKRNQRNFNKTIKYECRKTLADKRVRVRGRFAKNNNDHHHHIDHHPCEDQVLPGINTAINSSEEDLQQLYMTNSFLMKQDYDVEEEWLQEAMASLLY 246
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre6g00727 246 ProSiteProfiles CCT domain profile. 141 183 IPR010402 GO:0005515(InterPro)
Stre6g00727 246 Pfam CCT motif 141 183 IPR010402 GO:0005515(InterPro)
Stre6g00727 246 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 78 232 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(PANTHER)|GO:0009909(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre6g00727 K03539 ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr5:94287697 Stre6g00727 Stre-Chr6:21315735 dispersed
Stre Stre-Chr6:21315735 Stre8g00912 Stre-Chr8:21040846 dispersed
Stre Stre-Chr6:21315735 Stre10g00576 Stre-Chr10:12393615 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Stre9g01631 ACH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 48.592 1.16e-124 363.0
Stre9g02882 ACH 1 224 C2C2-CO-like Transcription Factor family AT1G75540 48.707 8.04e-61 192.0
Stre9g02864 ACH 1 224 C2C2-CO-like Transcription Factor family AT1G75540 48.276 8.29e-59 187.0
Stre9g01694 ACH 1 206 C2C2-CO-like Transcription Factor family AT1G75540 51.905 1.85e-62 195.0
Stre1g00594 ACH 306 386 C2C2-CO-like Transcription Factor family AT5G24930 41.463 1.80e-11 63.5
Stre1g03002 WGDA 282 337 C2C2-CO-like Transcription Factor family AT5G15850 46.429 2.04e-10 58.2
Stre10g00576 WGDA 176 276 C2C2-CO-like Transcription Factor family AT2G24790 38.614 2.06e-12 65.1
Stre10g02095 . 100 319 C2C2-CO-like Transcription Factor family AT3G02380 29.317 4.91e-13 67.4
Stre11g01660 . 12 398 C2C2-CO-like Transcription Factor family AT2G33500 39.54 2.08e-77 244.0
Stre11g02050 WGDA 4 170 C2C2-CO-like Transcription Factor family AT5G54470 44.318 1.65e-30 109.0
Stre11g02641 ACH 289 399 C2C2-CO-like Transcription Factor family AT1G68520 42.857 7.35e-21 91.7
Stre4g00116 . 1 183 C2C2-CO-like Transcription Factor family AT4G38960 58.986 1.08e-81 239.0
Stre4g00124 . 1 183 C2C2-CO-like Transcription Factor family AT4G38960 59.535 5.30e-82 240.0
Stre4g01641 ACH 13 347 C2C2-CO-like Transcription Factor family AT3G02380 46.939 1.20e-108 322.0
Stre4g02158 ACH 1 330 C2C2-CO-like Transcription Factor family AT1G75540 41.499 1.55e-65 207.0
Stre2g03741 ACH,WGDA 1 298 C2C2-CO-like Transcription Factor family AT1G78600 54.194 5.84e-98 288.0
Stre2g01861 . 285 399 C2C2-CO-like Transcription Factor family AT1G68520 39.189 9.71e-20 87.0
Stre2g05564 . 115 318 C2C2-CO-like Transcription Factor family AT3G02380 28.986 1.66e-14 68.9
Stre2g02815 . 270 401 C2C2-CO-like Transcription Factor family AT1G68520 42.105 1.05e-21 94.0
Stre2g02706 . 3 222 C2C2-CO-like Transcription Factor family AT3G21150 30.045 2.02e-18 77.4
Stre2g05534 ACH 1 331 C2C2-CO-like Transcription Factor family AT1G75540 42.899 5.70e-80 244.0
Stre2g02826 . 270 401 C2C2-CO-like Transcription Factor family AT1G68520 42.105 1.02e-21 94.0
Stre2g02701 . 3 222 C2C2-CO-like Transcription Factor family AT3G21150 30.045 2.43e-18 77.0
Stre2g04168 WGDA 14 406 C2C2-CO-like Transcription Factor family AT5G24930 48.03 2.80e-97 294.0
Stre2g03857 . 3 223 C2C2-CO-like Transcription Factor family AT4G27310 35.931 2.05e-31 112.0
Stre2g00404 WGDA 3 101 C2C2-CO-like Transcription Factor family AT4G27310 51.0 3.52e-29 107.0
Stre2g03707 ACH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 55.309 1.86e-131 380.0
Stre8g00332 . 8 328 C2C2-CO-like Transcription Factor family AT2G47890 45.205 6.04e-94 282.0
Stre8g02962 . 10 267 C2C2-CO-like Transcription Factor family AT1G68190 38.38 4.58e-54 181.0
Stre8g02720 . 10 399 C2C2-CO-like Transcription Factor family AT2G33500 40.094 2.45e-89 274.0
Stre8g00912 WGDA 185 270 C2C2-CO-like Transcription Factor family AT2G24790 39.535 2.02e-12 63.2
Stre8g01727 ACH 259 331 C2C2-CO-like Transcription Factor family AT5G57660 42.466 3.83e-10 57.4
Stre8g02712 WGDA 10 399 C2C2-CO-like Transcription Factor family AT2G33500 40.094 2.45e-89 274.0
Stre3g01143 ACH,WGDA 1 299 C2C2-CO-like Transcription Factor family AT1G78600 46.349 1.90e-83 251.0
Stre3g01142 . 1 297 C2C2-CO-like Transcription Factor family AT1G78600 48.208 1.15e-83 252.0
Stre3g01147 ACH 1 299 C2C2-CO-like Transcription Factor family AT1G78600 46.349 1.90e-83 251.0
Stre3g00918 WGDA 45 406 C2C2-CO-like Transcription Factor family AT5G24930 47.165 1.14e-94 286.0
Stre3g00565 WGDA 283 340 C2C2-CO-like Transcription Factor family AT5G15850 51.724 1.09e-13 68.9
Stre3g02187 ACH 9 296 C2C2-CO-like Transcription Factor family AT3G02380 47.5 2.98e-91 275.0
Stre3g01505 ACH 334 388 C2C2-CO-like Transcription Factor family AT5G24930 49.091 1.92e-11 62.8
Stre5g03084 . 8 355 C2C2-CO-like Transcription Factor family AT5G57660 44.531 3.33e-94 284.0
Stre5g02221 ACH 250 319 C2C2-CO-like Transcription Factor family AT3G02380 41.333 2.86e-11 62.4
Stre5g01567 . 4 127 C2C2-CO-like Transcription Factor family AT5G54470 46.774 1.27e-30 108.0
Stre5g02787 ACH 1 372 C2C2-CO-like Transcription Factor family AT3G07650 51.979 1.26e-126 366.0
Stre7g02298 ACH 284 331 C2C2-CO-like Transcription Factor family AT5G57660 54.167 3.22e-10 58.2
Stre6g00314 ACH 1 371 C2C2-CO-like Transcription Factor family AT3G07650 54.478 1.52e-136 393.0
Stre6g00315 . 1 136 C2C2-CO-like Transcription Factor family AT5G48250 68.382 5.61e-61 191.0
Stre6g00727 . 242 319 C2C2-CO-like Transcription Factor family AT3G02380 38.462 3.66e-11 60.5
Stre6g00153 . 1 204 C2C2-CO-like Transcription Factor family AT1G75540 52.683 4.95e-63 196.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Stre CCT 2.3e-18 CL0281 TR Others