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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre6g00735 ATGGCGGTTGAAGCAGGTCACCACACTCTATTCTATCCTCAAATGATGAGAACAAACACCATTGATAATCATGCCACTGGTAACACTCCGTTAGGATTTGGAATCGGTAATCCTCTCTCAGCGATGTACTGCTCTTCTCCGGTTTCTAGAAAACGAGCTAGAGATTGCTCTGATTTCAACACCTTGAATTCCTTCGTTAACAGTCAGAATCAAAATCAGATCCAGCGGTGTGGAACATATACGTTTCTCGGAGAAGATATCTCGATGCAGATGCAACAACAACAGTTAGAAATCGATCAATTCATCGCGCATCATAGATTAAGAGCAAAAGAAGAAGAAATCATGAAAATCGCGAGATTAAATTGTGCCTTAGAAGAAAAAGTGAAATCCCTGTGTGTAGAGAATCAAATCTGGCGAGAATTGGCTCAATCAAACGAAGCAACAGCTAACGCATTACGCAGCAACTTGAAACAAGTTCTGGAACACGTCGTTCACGATGAGTACCGTCACCGCACCACCGTGTCACACGACGGGAAGCGAATCATGTGTGTTGCTTCTTCCTTGCAGACATCTATGCCTTGCACAGTATGTGCTTCTTCTGTTAACACTTGCCCTGTTTGTAAATCCACAAAGAATATCAGTGTTCATGTGAACTTGTCATGA 663 42.53 MAVEAGHHTLFYPQMMRTNTIDNHATGNTPLGFGIGNPLSAMYCSSPVSRKRARDCSDFNTLNSFVNSQNQNQIQRCGTYTFLGEDISMQMQQQQLEIDQFIAHHRLRAKEEEIMKIARLNCALEEKVKSLCVENQIWRELAQSNEATANALRSNLKQVLEHVVHDEYRHRTTVSHDGKRIMCVASSLQTSMPCTVCASSVNTCPVCKSTKNISVHVNLS 220
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre6g00735 220 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 104 169 - GO:0004842(PANTHER)|GO:0043067(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre6g00735 K19042 E3 ubiquitin-protein ligase BOI and related proteins [EC:2.3.2.27]
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Event-related genes

Select Gene_1 Gene_2 Event_name
159747 Stre2g04033 Stre6g00735
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr6:21713268 Stre9g01522 Stre-Chr9:26817232 dispersed
Stre Stre-Chr6:21713268 Stre6g00736 Stre-Chr6:21871848 tandem
Stre Stre-Chr2:145269305 Stre6g00735 Stre-Chr6:21713268 wgd
Stre Stre-Chr3:13155254 Stre6g00735 Stre-Chr6:21713268 wgd