AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre6g00842 ATGAAGCAACGTTTGATGGTCAGGGCGTTTTCCAAAACGCTAACCTTGATTCCGTTCTACCGTCCTTATTGTGCTTCGTTTTCTACTGATTCTTCAAGTTTTGCAATCAAGAATGTCACTAGATCCAACTTTGATTCGTCTTTGTCTGACCTTCAACAACATGTCAGAGACTCTGATTTTGTGTCAGTTGACTTAGAAATGACAGGTGTCACAAGCTCTCCATGGAGAGAGTCATTTGAGTTTGATAGATTTGATGTTAGGTATCTCAAGGTGAAGGATTCTGCTGAGAAATTTGCGGTTGTTCAATTTGGAGTTTGCCCCTTTAGGTGGGACCCAACCAAACAGTCATTTATCGCCCACCCACACAACTTTTATATCTTTCCAAGGCAAGAAGTTGGAGGTGATGACTCATCTTATGAGTTCTTGTGTCAGACTTCCTCAATTGAATTTTTGGCGAAGTACCAGTTTGATTTTAACACATGTGTAAAAGAAGGAATATCTTATTTATCCAGAGCACAAGAAGATGATCTCAGGTTGCAGTTACATTCAGCACATGAAGACGAGTCATCAGATTCACCATACTCAGCTAAAGAAATTACAGATATACCCCTGGTTAGAATGGCAGATATTCTGTTTGTGGAGAGAATGAGGAACAATATCAGTCAATGGCATGATGACATGTTACAGATTACAATCAGAGGGTCCCACAAGACCCTAGAAGATTCCAATGACTCAATCGATCAGTTTCAGACTATTTTCTTTCGGACGCATCCAGCCATTAAATTGAATGGTTTCACTTCCCGCCAACTAAGGTTAATTAAGTCGGTTGTAGAAAAGAGTTTTAAAGATTTAGCTTACATCCGTGTAAATGATGATTCATGTTTTCAACACATTATCGTCTACATAGACTCTACAAGGGATCTAGAGTCACTTATGAAAGAGGTTAAAGAAAGCCGTTTCAAGGAAACAGAAAAGAAGATTGAATCTGCTATTGGCTTCCGCCGTGTGATCGACCTTCTTTCGTCTGAACAAAAGTTGATTGTCGGACACAACTGTTTTCTTGATATTGCGCATATATGTAGAAAATTTGTTGGCCCGCTTCCTTCAAGTCTTGAGGAATATGTACCATTAGTTAAAAAAAGCTTCCCGTTTATAATCGACACAAAAATCCTCTTGAATGCCAATAACACATTGCAATTAAAAATGAAGAAAAATAGCACATCACTCGCCAAAGCGTTTGCAATTTTGTGTCCACATATTGCTTCAGGAGCTGGTAGTTTTGGTTCTGGTAATAATAATTCTGTTGCGGTAGAGGTTCAAGTTGATGATATGAGGTCATCAAACTGGAACTCTGGAGCTAAACACGAAGCTGGTTATGATGCTTTCATGACAGGTTGTATATTCGCGCAATCATGCAACCATCTTGGTATCAACTTCACCTCTAACTCAATATTAACGAAAGAAGATAAACTTCAAAGTTACATCAATCTTCTCTACCTCAGCTGGTCTAGTGGCGACATAGTTGACTTAAAAACCGGTCAAACCCGAACAGAATCTTCAGCATTCAACAATTTCAAGATCCAACAAACAAAGATTCTGTTTCCAAATATCGTTATTATCTGGGGGTTTTCATCCAAGCTCAAAGCACGGGAGATTAAAGAATCTTTGACCAAAGTGTTTGGGTTGACTTCTGTTACATCCATCTTCCATTTGGATAAAACTGCGGTGTTTGTTCAGTTTAACAAACCAGAATTAGTTTCTGAATTTTTGAAACTGAAATTGGAGATGGAGAGTAAGAAGAACGATGCGATTTATGTTTTGCATCCGTTTTCAGACCTTCTAGAAGGTGGGCTTACGGGTGCTGGTTGTTATGAGGTGTATAAAGAAATTTGCGGATCACCCGTTTCAAAAGCTTTGTTTGCTGATCAAGCTGAAGCTGTACGTGTTCCTAATTTGGACTCCAAACTGTTTGGAAGTAGGGCCCACAAAAGTAAAAGTGATTCATTTGTTGATTCAGATTCCAGAATTGATACCAAAACAGTAGTAGCCAATGGGGAAGTACTAAATTTGGTATCATGCTGA 2082 38.86 MKQRLMVRAFSKTLTLIPFYRPYCASFSTDSSSFAIKNVTRSNFDSSLSDLQQHVRDSDFVSVDLEMTGVTSSPWRESFEFDRFDVRYLKVKDSAEKFAVVQFGVCPFRWDPTKQSFIAHPHNFYIFPRQEVGGDDSSYEFLCQTSSIEFLAKYQFDFNTCVKEGISYLSRAQEDDLRLQLHSAHEDESSDSPYSAKEITDIPLVRMADILFVERMRNNISQWHDDMLQITIRGSHKTLEDSNDSIDQFQTIFFRTHPAIKLNGFTSRQLRLIKSVVEKSFKDLAYIRVNDDSCFQHIIVYIDSTRDLESLMKEVKESRFKETEKKIESAIGFRRVIDLLSSEQKLIVGHNCFLDIAHICRKFVGPLPSSLEEYVPLVKKSFPFIIDTKILLNANNTLQLKMKKNSTSLAKAFAILCPHIASGAGSFGSGNNNSVAVEVQVDDMRSSNWNSGAKHEAGYDAFMTGCIFAQSCNHLGINFTSNSILTKEDKLQSYINLLYLSWSSGDIVDLKTGQTRTESSAFNNFKIQQTKILFPNIVIIWGFSSKLKAREIKESLTKVFGLTSVTSIFHLDKTAVFVQFNKPELVSEFLKLKLEMESKKNDAIYVLHPFSDLLEGGLTGAGCYEVYKEICGSPVSKALFADQAEAVRVPNLDSKLFGSRAHKSKSDSFVDSDSRIDTKTVVANGEVLNLVSC 693
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre6g00842 693 PANTHER POLY A -SPECIFIC RIBONUCLEASE-TARGET OF EGR1, MEMBER 1 36 647 IPR051181 GO:0000175(PANTHER)|GO:0003723(PANTHER)|GO:0005737(PANTHER)
Stre6g00842 693 SUPERFAMILY Ribonuclease H-like 36 480 IPR012337 -
Stre6g00842 693 Gene3D - 216 514 IPR036397 GO:0003676(InterPro)
Stre6g00842 693 Gene3D - 38 202 IPR036397 GO:0003676(InterPro)
Stre6g00842 693 Pfam CAF1 family ribonuclease 39 468 IPR006941 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre6g00842 K01148 poly(A)-specific ribonuclease [EC:3.1.13.4]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr6:26528557 Stre6g01307 Stre-Chr6:61018200 dispersed