AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre6g00871 ATGTTATGCCTTTCATCGATCGGAAAAACTGTCATGAGTACGAAGAAACTTCGCACACCCGCTGAAGTGGTTCAAAAAACTCGATCCTTACTTCTTTACTCCAAAAACTCACTCAATGTCGAATCATCGCAAAATTTGCGACCACAAATGATACTGACGCAAAATTGTCTTGCCACTCGAAAAATCCCCCAAAAAATCGGAAGAATGACAGAACTAAACTCACTAATTAGGGAATTAAAGTTGATTCTTTATGGAGATGATGAGTCAGAACCTTCTGCTGAAGCTTGTACACAGTTGACTGTAGAGTTTTTTAAAGATGACACCTTGCGCCTACTAATTATCTTTCTTCCGAAATTAAACTTAGAGGCCCGTAAAGACGCCACACAAGTCGTTGCAAGTTTGCAAAGACAACCGCTGCCATCGCGCTTCGAGGTATCGCGATATCTGGAAGCTAATCTTGATCTTTTAGACATTCTCATATCCGGGTATGAGGATCCTCAATTAGCTCTTCATTATGGTAGGATGTTGAAGGAGTGCTTACGTCATCAAATTGTTGCAAGTTACTTGCTAGAACCAAATCAACTGAAGAAACTTTTTGGTTACATACAACATCCAAGTTTTGATATTGCTGCAGATGCTGCAGATGCATTCAAGGATCTTTTGACAAGGCATAAGTCTACTGTGTCTGAATCTTTGTCGAAAAACTATTGTTGGTTTTTTACTGAAATGAACGAAAAGCTACTGAAATCTACAAATTATATCACCAAAAGACAAGCTGTTAAGCTATTAGGATGCATGTTGCTCGATCGTTCGAATTCTAGTGTTACGACGCGATATGTGAGCTCGAAAGATAACCTAATAATTCTAATGAATCTTTTAAGGGATCAAAGTAAGAGCATCCAGATTGATGCTTTTCATGTTTTCAAGCTATTTGTAGCAAATGAAAACAAGACTCCCGAAATAGTGAGCATACTGGTTACAAACAGAAGCAAGATTATACGTTTACTTAGTGCTTTCGGCTATACAGGTAGTCAACATGATGAAGTGTTTGAGACAGACAAAATCAAGGTGGTCAACAAACTAGCTGTACTGGAGCTTCAAGACTAA 1107 38.48 MLCLSSIGKTVMSTKKLRTPAEVVQKTRSLLLYSKNSLNVESSQNLRPQMILTQNCLATRKIPQKIGRMTELNSLIRELKLILYGDDESEPSAEACTQLTVEFFKDDTLRLLIIFLPKLNLEARKDATQVVASLQRQPLPSRFEVSRYLEANLDLLDILISGYEDPQLALHYGRMLKECLRHQIVASYLLEPNQLKKLFGYIQHPSFDIAADAADAFKDLLTRHKSTVSESLSKNYCWFFTEMNEKLLKSTNYITKRQAVKLLGCMLLDRSNSSVTTRYVSSKDNLIILMNLLRDQSKSIQIDAFHVFKLFVANENKTPEIVSILVTNRSKIIRLLSAFGYTGSQHDEVFETDKIKVVNKLAVLELQD 368
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre6g00871 368 Pfam Mo25-like 16 364 IPR013878 -
Stre6g00871 368 Gene3D - 17 365 IPR011989 -
Stre6g00871 368 SUPERFAMILY ARM repeat 71 361 IPR016024 -
Stre6g00871 368 PANTHER CALCIUM-BINDING PROTEIN 39-RELATED 13 365 IPR013878 GO:0035556(PANTHER)|GO:0043539(PANTHER)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre6g00871 K08272 calcium binding protein 39
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr6:28065143 Stre6g03422 Stre-Chr6:100368321 dispersed