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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre8g02866 ATGGCTCATTTAGAATCAAACAAAAGCAGAGGTGAAGTCAGAATTCATGAAAATTTGAATGATCTTAGTGCGGATTTGGCTGATTATATCGCAGAATTATCCGAGCAATCGGTTAAAGATCGTGGCTTTTTTGCCATTGCTTTATCTGGTGGTTTGATTATTAGCTTAATGAGGAATCTGTGTGGAGCTCCTTATAATAAGACTGTTGACTGGTCAAAATGGTATATATTTTGGGCTGATGAACGAGTGGTTGCCAAGAATCATGTCGATAGCAACTATAAACTTGCAAAAGATCATCTTTTTTCTAAGTTGCCTATTATTCCTAGCCATATACATTCCATCAATGATGCTCTAACTGCCGAAGAAGCTGCAAAAGAATACGAGTTTGTGATCAGACAACTGGTCAGAACCCGTGTGGTCGACGTGTCTGAAGTCAACGACTGCCCGAAGTTTGACCTCATCCTTCTAGAAATGGGCCCCGATGGCCACGTGGCGTCTTTGTTTCCAAATCATTCGGTTCTTGAAGAAAAGAACGAATGGGTTACGTTCATCACCAATTCCCCTAACCCTCCACCCGAAAGAATCACCTTCACACTGCCTGTTATCAACTCTGCCGCCAATGTGGCGGTTGTGGTGACAGGTGGCGGGAAAGTGGAAGCTTTCCGGCTGCTGATTGATGACGTGGGACCCACGCGTTCGGTATTGCCAGCTAAGATGATTGAACCAATTGTAGGGAAACTGGTGTGGTTTTTGGATCAACAGGTTGCTTCAAAGCTCGAGGGTTTTTCTCAATTTTCTAAGTAG 804 43.53 MAHLESNKSRGEVRIHENLNDLSADLADYIAELSEQSVKDRGFFAIALSGGLIISLMRNLCGAPYNKTVDWSKWYIFWADERVVAKNHVDSNYKLAKDHLFSKLPIIPSHIHSINDALTAEEAAKEYEFVIRQLVRTRVVDVSEVNDCPKFDLILLEMGPDGHVASLFPNHSVLEEKNEWVTFITNSPNPPPERITFTLPVINSAANVAVVVTGGGKVEAFRLLIDDVGPTRSVLPAKMIEPIVGKLVWFLDQQVASKLEGFSQFSK 267
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre8g02866 267 CDD 6PGL 21 251 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Stre8g02866 267 SUPERFAMILY NagB-RpiA-CoA transferase-like 13 260 IPR037171 -
Stre8g02866 267 Pfam Glucosamine-6-phosphate isomerases-6-phosphogluconolactonase 20 249 IPR006148 GO:0005975(InterPro)
Stre8g02866 267 FunFam Probable 6-phosphogluconolactonase 8 260 - -
Stre8g02866 267 PANTHER 6-PHOSPHOGLUCONOLACTONASE 1 260 IPR039104 -
Stre8g02866 267 Gene3D - 8 261 - -
Stre8g02866 267 NCBIfam 6-phosphogluconolactonase 15 258 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre8g02866 K01057 6-phosphogluconolactonase [EC:3.1.1.31]
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Event-related genes

Select Gene_1 Gene_2 Event_name
435292 Stre5g00313 Stre8g02866
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5206801 Stre Stre7g02284 Stre-Chr7:93614782 Stre8g02866 Stre-Chr8:94974987
5208214 Stre Stre8g01690 Stre-Chr8:59847226 Stre8g02866 Stre-Chr8:94974987
5237906 Stre Stre5g00313 Stre-Chr5:7848566 Stre8g02866 Stre-Chr8:94974987