AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre9g01547 ATGAACAAACTGGGCAGAGGAAATCGTGACAAAGTTCAACAATTCATGACAATCACTGGAGCAAGTGAGAAAGTTGCTCTTCAGGCTTTGAAAGCCAGTGATTGGCATCTTGATGGTGCATTTGATATCTTTTATAGCCAACCTATTGCTAAATCATCCACAGATACGCGCCATTTAGAGGAATTGTACAAAAAATACAAAGATCCTTATGCTGATATGATTATGGCTGATGGGATTAGTAATCTCTGCAATGACCTTCAGGTGGATCCTCAAGATATTGTTATGTTAGTTGTTTCATGGCACATGAAGGCTGCTACCATGTGTGAATTCTCTAAACAGGAATTTGTTGGTGGTTTGCAGTCTTTAGGGATAGATACGCTGGAGAAATTCCGTGAGCGGATATCATCAATGCGTTCTGAGCTGAAAGATGATCAAAAATTCAAGGAGATTTATAATTTTGCATTCAGCTGGGCAAAAGAAAAGGGTCAGAAGTCTTTGGCATTGGATACAGCAATAGGGATGTGGCAATTGTTGTTTGAAGAAAAACAATGGCCATTAGTTGATCATTGGTGCCAGTTTTTACAGTCGCGACATAATAAAGCTATCTCTCGAGATACTTGGTCTCAGTTACTAGAATTTGCAAGAAGTGTGGACCCTACATTATCAAATTATGATGCTGAAGGTGCATGGCCATATCTAATTGATGAATTTGTGGAGTACTTAACAGAAAATGGCATAATTCAGAAGGGGATGATGAAGGAATGGTTGTAG 771 39.04 MNKLGRGNRDKVQQFMTITGASEKVALQALKASDWHLDGAFDIFYSQPIAKSSTDTRHLEELYKKYKDPYADMIMADGISNLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFVGGLQSLGIDTLEKFRERISSMRSELKDDQKFKEIYNFAFSWAKEKGQKSLALDTAIGMWQLLFEEKQWPLVDHWCQFLQSRHNKAISRDTWSQLLEFARSVDPTLSNYDAEGAWPYLIDEFVEYLTENGIIQKGMMKEWL 256
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre9g01547 256 Pfam UBA-like domain 9 47 - -
Stre9g01547 256 Pfam Cullin binding 130 240 IPR005176 -
Stre9g01547 256 Gene3D Cullin, PONY binding domain 143 250 IPR042460 -
Stre9g01547 256 FunFam Defective in cullin neddylation protein 53 142 - -
Stre9g01547 256 FunFam Defective in cullin neddylation protein 6 47 - -
Stre9g01547 256 FunFam Defective in cullin neddylation protein 143 248 - -
Stre9g01547 256 CDD UBA-DCNL 8 48 - -
Stre9g01547 256 PANTHER RP42 RELATED 24 244 IPR014764 GO:0000151(PANTHER)|GO:0031624(PANTHER)|GO:0032182(PANTHER)|GO:0045116(PANTHER)|GO:0097602(PANTHER)
Stre9g01547 256 ProSiteProfiles DCUN1 domain profile. 54 242 IPR005176 -
Stre9g01547 256 SUPERFAMILY UBA-like 8 46 IPR009060 GO:0005515(InterPro)
Stre9g01547 256 Gene3D - 7 47 - -
Stre9g01547 256 Gene3D - 52 142 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre9g01547 K17822 DCN1-like protein 1/2
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr4:89086870 Stre9g01547 Stre-Chr9:27134444 dispersed
Stre Stre-Chr9:27134444 Stre2g02044 Stre-Chr2:82380536 transposed