AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre9g01619 ATGTTATCATTCGACGAGAGAAGACCTGTGTTGAAACCACCTGAGTCTAAAATAGAACAAGATTCTGGTTCAACTAATTCCGGTTTGGACCCATCAAAGTTAGGTGAACAAAAAGAGAGAAATAAGGTTATTGAGTCATTAGGAGATGTATTAGAGAAAGCAGAGAAATTAGAAGCAATCAAGAACACAGAAATCCCGAATAAAAAGCTATCAACTTCACCTTCACCATCACCAAACGCAAACAACGCCAATCGGTCAACCGTTGCTCCATTAAGACCACCTCAAAGGTCCCAACCACAATTGCAATCAAAACCATCTGCAATTCCTGTTAAAAAACCACCCATTTTGAAAGATTTAGGAGCTGCTTCAAAACCTGCTGTAACTGATGAAAGTGAATCTGGTATAAAAACAAAAGAACGAAGCGGGCCAATTTTAATTGATAAATTTGCATCCAAGAGACCTGCGGTTGACCCTTTGATAGCTCAAGCGGTTTTAGCACCACCTAAACCAGGAAAGATTCCGCCTCCTGGGAAATTTAAGGATGATTTTAGAAAGAAAAGTGGTGCACCGGCCCGTGAAATACTTGGTCATCTTTATGCAAAGGGTATTAAGCCTGATGGGGTGCAAAAATTGGATAAAGAAATGGTGAAAATGGTTTGTAGGGAGTATGATGTGGAGGTTATTGATGTGGGTCCAGCTAAAATAGAGGAAATGGCGAAAAAGAAAGAGATATTAGATGAAGAAGATCTTGATAATTTACAAGATCGACCCCTGTTCTCACTATTATGGGTCATGTCGATCATGGAAAAAGCTCGTGGTGCTAGGGTTACAGATATTGCCATAATGTGCAGCTGCATAGATAGAGTCATGCAAGTTATGCAGGAACTTTCTTCAAATGGTTGCCAACCTGAAGATTGGGGTGGTGATGTACCTATGGTTCAGATCAGTGCTCTTACTGGCAAGAATGTTGATGATCTGTTGGGGAAACCACGATGCTTGTTGCAGAGCCTGCTTACAAAACTGCAAGAATTGAAAGCTAATCCTGAGAGAAATGCAAAGGGTACCGTAATTGAAGCGGGTCTTGATAAATCAAAAGGACCAGTTGCTACTTTTATCGTGCAAAATGGGACACTTAAAAAAGGGGATGTGGTTGTCTGTGGTGAAGCCTTTGGAAAGGTGCGAGCTTTATTTGATGATGCTGGAAAGCGCGTTGATGCTGCTGGACCATCAATACCAGTGCAGGTGATTGGATTAACAATGTCCCATTAG 1269 41.21 MLSFDERRPVLKPPESKIEQDSGSTNSGLDPSKLGEQKERNKVIESLGDVLEKAEKLEAIKNTEIPNKKLSTSPSPSPNANNANRSTVAPLRPPQRSQPQLQSKPSAIPVKKPPILKDLGAASKPAVTDESESGIKTKERSGPILIDKFASKRPAVDPLIAQAVLAPPKPGKIPPPGKFKDDFRKKSGAPAREILGHLYAKGIKPDGVQKLDKEMVKMVCREYDVEVIDVGPAKIEEMAKKKEILDEEDLDNLQDRPLFSLLWVMSIMEKARGARVTDIAIMCSCIDRVMQVMQELSSNGCQPEDWGGDVPMVQISALTGKNVDDLLGKPRCLLQSLLTKLQELKANPERNAKGTVIEAGLDKSKGPVATFIVQNGTLKKGDVVVCGEAFGKVRALFDDAGKRVDAAGPSIPVQVIGLTMSH 422
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre9g01619 422 MobiDBLite consensus disorder prediction 1 15 - -
Stre9g01619 422 CDD IF2-mtIF2-II 352 418 IPR044145 -
Stre9g01619 422 Gene3D Translation factors 346 421 - -
Stre9g01619 422 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 36 254 IPR015760 GO:0003743(PANTHER)|GO:0005737(PANTHER)|GO:0006413(PANTHER)
Stre9g01619 422 MobiDBLite consensus disorder prediction 65 105 - -
Stre9g01619 422 SUPERFAMILY Translation proteins 348 419 IPR009000 -
Stre9g01619 422 MobiDBLite consensus disorder prediction 1 41 - -
Stre9g01619 422 MobiDBLite consensus disorder prediction 18 32 - -
Stre9g01619 422 Pfam Elongation factor G domain 2 352 418 IPR053905 -
Stre9g01619 422 MobiDBLite consensus disorder prediction 58 136 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre9g01619 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr9:28553390 Stre6g00374 Stre-Chr6:9973399 transposed