AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre9g01621 ATGGCGGACAAGACAGAAAAGACCACCGCTACAAGAACCTCTGCAATTGAAGAAGATGGAATCTCCGGTATCCGCACGGCGGAGACGCTCCTGAGGCTTTTTCCGGTGGGGTTGTGTGTGGCGGCACTAGTCGTCATGATTAAGGATTCTGAGACTAATGAATATGGTTCTTTATCCTACTCCAACATCACTGCGTTCAGGTTTTTGGTGCATGCTAATGGGATATTGGCTGGTTATTCGCTACTATCGGCGGCTTTCACGGCGGTACCTCGACCAATAACCATGTCTCGAGCCTGGACCTTCTTCTTTTTGACCAGGTTGATCTTCAACTCTCAAATCTCAATCACCTTCAATTTCTTCAAAAGGATAATATGTAGTACTAAAAGTAAAACAAAAGGTTCATTGTCTCAATCACCTACATGGGTTTTAACATATCTGATACTGGCTGCCGGAGCTGTGGCAACTGAGGTGGCGTTTCTAACATACAAAGGTGACGTGGCGGTGACATGGAGCGAAGCGTGTGGGACCTACGGTCGGTTTTGTAGACAAGCAACAGCATCCATCGTTATCACCTTTCTAGCGGTGATCTGCTACGTTTATTATCGTTAA 609 46.14 MADKTEKTTATRTSAIEEDGISGIRTAETLLRLFPVGLCVAALVVMIKDSETNEYGSLSYSNITAFRFLVHANGILAGYSLLSAAFTAVPRPITMSRAWTFFFLTRLIFNSQISITFNFFKRIICSTKSKTKGSLSQSPTWVLTYLILAAGAVATEVAFLTYKGDVAVTWSEACGTYGRFCRQATASIVITFLAVICYVYYR 202
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre9g01621 202 NCBIfam plant integral membrane protein TIGR01569 140 199 IPR006459 -
Stre9g01621 202 Pfam Casparian strip membrane protein domain 126 197 IPR006702 -
Stre9g01621 202 Pfam Casparian strip membrane protein domain 23 104 IPR006702 -
Stre9g01621 202 PANTHER CASP-LIKE PROTEIN 4A4 19 199 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre9g01621 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr6:9952989 Stre9g01621 Stre-Chr9:28579652 wgd