AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Taer1g05395 ATGACCCGTAAGCAAGAGACTCTGCTCGGTTCTGGAGCTCTTGTAGCGATTACTGTCCTTTTATCGTTGAAGTTGTTTAGTGATCATCTTGGTAATTGGAAGAAACCCAAAGAACAGAAGGCGATTCTAGTGATAATTCTCATGGCACCCATTTATGCTGTTGATTCTTATGTTGGGTTGCTTGATATTCGTGGTAGTGAGACGTTTTTTGTGTTCTTGGATTCCATCAAGGAGTGCTACGAGGGTCTGGTGATGGCCAAGTTCTTGGCTTTGCTGTACACTTATTTAAATATATCTATCAGCAAGAATATAGTTCCGGATGAGATCAAAGGAAGAGAGATCCACCATTCGTTCCCAATGACTCTCTTTCAACCTCATTCGGTTCGTTTGAACCATCAAAACCTCAAGCTCCTTAAGTATTGGACATGGCAGTTTGTAGTGATCCGCCCTGTGTGCTCTGTCTTGATGATAGTTTTGCAACTGCTTGAAATTTATCCTGATTGGCTTAGCTGGACAATCACTATGATCTTGAATGTATCAGTTTCCTTAGCATTATACGCACTTGTGGTTTTCTATCATGTTTTTGCTAAAGAATTGGCACCACATAAGCCACTTGCCAAGTTCTTATGCGTCAAAGGGATCGTTTTCTTCTGTTTTTGGCAGGGAGTTGTACTGAGTGGTCTAGTGGCACTGGGCATAATAAAATCAAATCACTTCTGGCTCGATGTGACGCATATACAGCAAGCGCTGCAAAACGCATTAGTGATTGTGGAGATGGTGTTTTTCTCAATCTTTCAGTTGTATGCATACTCTGCTGCACCATACAAGGATCTTGATGTGAAAGAGAAGAAGAAAGAGTAA 861 41.35 MTRKQETLLGSGALVAITVLLSLKLFSDHLGNWKKPKEQKAILVIILMAPIYAVDSYVGLLDIRGSETFFVFLDSIKECYEGLVMAKFLALLYTYLNISISKNIVPDEIKGREIHHSFPMTLFQPHSVRLNHQNLKLLKYWTWQFVVIRPVCSVLMIVLQLLEIYPDWLSWTITMILNVSVSLALYALVVFYHVFAKELAPHKPLAKFLCVKGIVFFCFWQGVVLSGLVALGIIKSNHFWLDVTHIQQALQNALVIVEMVFFSIFQLYAYSAAPYKDLDVKEKKKE* 287
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Taer1g05395 286 Pfam Organic solute transporter Ostalpha 10 275 IPR005178 -
Taer1g05395 286 SMART Solute-trans-a-2 7 275 IPR005178 -
Taer1g05395 286 PANTHER ORGANIC SOLUTE TRANSPORTER-RELATED 7 279 IPR005178 GO:0005215(PANTHER)|GO:0006810(PANTHER)|GO:0016021(PANTHER)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Taer1g05395 K14360 organic solute transporter subunit alpha
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Taer Taer-Chr1:49492498 Taer7g02139 Taer-Chr7:14494314 dispersed