AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Taer1g05424 | ATGGCGTCTTTTCACCAATCTCTCTGCATTTTCTTGTCTTTGTTCTTCACCTTACTCTGTTTTTCACAGGCTAACAATTTCAACGTCGGTGGTAAAGATGGTTGGACTCTGCACCCTTCTGAAAACTACAATCAATGGTCCAGCAGATTGAGGTTTATAGTCAACGATACTCTCCATTTCAAGTATAACAGTGGGTCAGACTCTGTACTGGAGGTGAGCAAAGCGGATTATGAGAGTTGCAACACGAACAGCCCCATAACCTCCCTCACCGGCGGCGATTCCGTCTTTAATTTAAACCGTCCGGGACCTTTTTACTTCATCAGTGGCAACAAATCCAACTGCGATCAAGGTCAAAAGCTAACCGTGGTTGTTATATCACCAAAAACAAAGCATACACCACCAGCAGCTGCACCAGCTCCGACAACTTCATCACCACCAGCACCGGGAACACCTGTATCAACTACTCCGGCAGCTTCACCAGCTGGGGGTGGTGCATCTTCTCCAACCGGTAGTCCCATAGCTTCACCGGGTGGAGGGATCGCATCTCCTCCCGCCGGTGGTCCATCGGCTTCACCGGGTGGAGGGATCTCATCTTCTCCCACCGGTGGTCCTGCTGGTGCACCGGGTGGAGAGATATCATCTTCTCCAACCGGTAGTCCGATTGGTTCTCCGGATGCTGGCGTGTCAGCGTCTCCCATAGGTAATCCGGCGGACGTGAATGGACCAGCACCCGGAGGGTCACCGGCTTCTTCGGCAGCAAGGGTTGCCGTTTCCGCAGCCTTGAGTGTCCCAATTGCCATGATACTCTTTGGGATGTGGTGGGTTTGTTAA | 831 | 51.87 | MASFHQSLCIFLSLFFTLLCFSQANNFNVGGKDGWTLHPSENYNQWSSRLRFIVNDTLHFKYNSGSDSVLEVSKADYESCNTNSPITSLTGGDSVFNLNRPGPFYFISGNKSNCDQGQKLTVVVISPKTKHTPPAAAPAPTTSSPPAPGTPVSTTPAASPAGGGASSPTGSPIASPGGGIASPPAGGPSASPGGGISSSPTGGPAGAPGGEISSSPTGSPIGSPDAGVSASPIGNPADVNGPAPGGSPASSAARVAVSAALSVPIAMILFGMWWVC* | 277 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Taer1g05424 | 276 | ProSiteProfiles | Phytocyanin domain profile. | 25 | 126 | IPR003245 | GO:0009055(InterPro) | |
| Taer1g05424 | 276 | MobiDBLite | consensus disorder prediction | 154 | 173 | - | - | |
| Taer1g05424 | 276 | MobiDBLite | consensus disorder prediction | 138 | 153 | - | - | |
| Taer1g05424 | 276 | Gene3D | - | 23 | 129 | IPR008972 | - | |
| Taer1g05424 | 276 | MobiDBLite | consensus disorder prediction | 129 | 250 | - | - | |
| Taer1g05424 | 276 | Pfam | Plastocyanin-like domain | 35 | 118 | IPR003245 | GO:0009055(InterPro) | |
| Taer1g05424 | 276 | SUPERFAMILY | Cupredoxins | 24 | 125 | IPR008972 | - | |
| Taer1g05424 | 276 | CDD | OsENODL1-like | 26 | 125 | IPR041846 | - | |
| Taer1g05424 | 276 | FunFam | Early nodulin-like protein 1 | 24 | 129 | - | - | |
| Taer1g05424 | 276 | PANTHER | BLUE COPPER PROTEIN | 16 | 148 | IPR039391 | GO:0009055(InterPro)|GO:0046658(PANTHER) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Taer1g05424 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 162183 | Taer1g05424 | Taer7g01474 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Taer | Taer-Chr1:49672332 | Taer1g05856 | Taer-Chr1:52953223 | dispersed | |
| Taer | Taer-Chr2:100838025 | Taer1g05424 | Taer-Chr1:49672332 | transposed | |
| Taer | Taer-Chr1:49672332 | Taer7g01474 | Taer-Chr7:9663214 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Taer1g03785 | . | 1 | 193 | PhytocyaNIN gene family | AT4G28365 | 44.56 | 2.85e-52 | 164.0 | |
| Taer1g05424 | ACH | 7 | 149 | PhytocyaNIN gene family | AT4G27520 | 53.147 | 4.80e-48 | 161.0 | |
| Taer1g05734 | . | 23 | 122 | PhytocyaNIN gene family | AT2G27035 | 31.304 | 2.16e-06 | 43.9 | |
| Taer1g05856 | ACH | 15 | 202 | PhytocyaNIN gene family | AT3G20570 | 39.378 | 2.15e-47 | 152.0 | |
| Taer1g06158 | . | 19 | 136 | PhytocyaNIN gene family | AT1G17800 | 39.496 | 1.09e-22 | 84.7 | |
| Taer1g06159 | . | 17 | 136 | PhytocyaNIN gene family | AT1G17800 | 38.843 | 9.21e-21 | 80.1 | |
| Taer2g02071 | . | 9 | 157 | PhytocyaNIN gene family | AT2G27035 | 43.137 | 1.42e-38 | 127.0 | |
| Taer2g02072 | . | 9 | 137 | PhytocyaNIN gene family | AT5G15350 | 42.308 | 1.76e-30 | 108.0 | |
| Taer2g02073 | . | 5 | 168 | PhytocyaNIN gene family | AT5G15350 | 49.398 | 4.20e-54 | 170.0 | |
| Taer2g02844 | . | 7 | 129 | PhytocyaNIN gene family | AT1G48940 | 54.762 | 4.04e-49 | 155.0 | |
| Taer2g03322 | ACH | 18 | 147 | PhytocyaNIN gene family | AT1G79800 | 40.769 | 4.03e-37 | 125.0 | |
| Taer5g02754 | . | 17 | 153 | PhytocyaNIN gene family | AT1G08500 | 46.043 | 6.39e-34 | 119.0 | |
| Taer6g01676 | . | 7 | 126 | PhytocyaNIN gene family | AT3G18590 | 32.258 | 2.79e-14 | 64.7 | |
| Taer7g00235 | ACH,WGDA | 10 | 133 | PhytocyaNIN gene family | AT1G79800 | 46.774 | 3.54e-36 | 124.0 | |
| Taer7g01441 | ACH | 4 | 183 | PhytocyaNIN gene family | AT3G20570 | 44.92 | 7.61e-47 | 153.0 | |
| Taer7g01474 | ACH | 8 | 202 | PhytocyaNIN gene family | AT4G27520 | 40.758 | 6.22e-42 | 143.0 | |
| Taer8g00120 | . | 27 | 130 | PhytocyaNIN gene family | AT3G20570 | 29.524 | 4.32e-12 | 58.9 | |
| Taer8g00121 | . | 27 | 130 | PhytocyaNIN gene family | AT3G20570 | 33.019 | 1.57e-13 | 62.8 | |
| Taer8g00122 | . | 27 | 130 | PhytocyaNIN gene family | AT3G20570 | 35.185 | 1.20e-15 | 68.2 | |
| Taer8g00213 | . | 19 | 129 | PhytocyaNIN gene family | AT5G57920 | 51.351 | 4.37e-40 | 132.0 | |
| Taer8g00456 | WGDA | 25 | 133 | PhytocyaNIN gene family | AT1G79800 | 46.789 | 2.22e-34 | 120.0 | |
| Taer8g01529 | . | 12 | 86 | PhytocyaNIN gene family | AT4G12880 | 37.662 | 1.06e-08 | 50.1 | |
| Taer9g02486 | . | 11 | 158 | PhytocyaNIN gene family | AT5G15350 | 39.189 | 6.75e-39 | 129.0 | |
| Taer11g00361 | ACH | 7 | 188 | PhytocyaNIN gene family | AT3G20570 | 43.407 | 1.94e-47 | 152.0 |