AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Taer1g05448 ATGGATCCAGGGATATTAGATCCGGATAAAATAAGCAAAGGGAAGAGTAAGTGGGGAGATGATAGTAAAGTATACACACGAAGGTCCAAAACCACCACCACCGTCACCGCCGTTTCTTCTCCGACGCCTACACCCACCGTCACTGCTACATCTCTACCTACTACCAGGTCCGCTTCTCCAACTACCACTCCAAATAACGCTCAAACCCTAGCTACCACTGAACATGTGAACTCGGAAACAACTCGCCGTAATTTATCGCCTGTGGTGGAGGCTTTTGATGATAGTTCTGTTCAGAATGGGCAGGTGTTTGGAAACGGGGTGATAAAACCGGTTGTTGTGTTGGTTGATGGTCGGGTTAGGATTAATATAAGAGCTGCCAAGGCCTCGAAGAATGAGATTATTGAGCTTACGGAGACGATTAAAGCTGAGCTTGAACGCGTTCGAGGGGTAGCTCAAAGGCTTGAAGATAAAGAAGCTGAGCTGACTGCTGTTTCAACTGATGTTGGTATTGCTGGTGAAGGTGAAGGTGAGGGTTACAACCTTATGCAGTATTCAAGTAATGATTTGGTTGATAGGAGAGCTTTAGTTAGAATTAATTCAGAAATGGGTACTGATTATATGGATCGTAGAGCATTGATGAGAATTAATTCTGAAGTGGGTTCGGTTACGGATAGTGGTGTAAGGCCGTTTAGGCATTTAAGTGTGTCGGTTATGAGTAACAGCCATGGAGTTGGTGAGTTTGCGGAGAAAGAGAAGAGAACACCGAAGGCTAATCAGTATTATCGAAATTCTGATTTTCTTTTAAGCAAAGACAGATTACCCCCTGAAAGTAACAAGAGGCGTAAATCTAACAGTGGAAGAAAACACAGCAAGGATTCGGGTTATGGAAGAGTGTTCAGGAATTGCAACAATTTGCTGCAGAGGTTAATGAAGCACAAATTTGGTTGGGTGTTTAATGAACCTGTTAATGCTAAACAGTTAGGACTTCATGATTACCATGACATCATTAAACACCCAATGGATTTGGGCACGATTAAGAGCCGTCTTGCGCAAAACTTCTACAAGTCTCCAATGGAGTTTGCAGATGACGTTAGACTCACATTTCGTAATGCTATGACGTATAATCCAAAAGGGCAAGATGTGCATCTTATGGCAGAGCAGTTATCGGAGTCTTTTGAAGAAAGGTGGGGTGTGATTGAATCAGAATATAATCCAGATTTGAGGTATGGAATGATTTATGACGCGAATACTCCAACGCCCACGTCAAGAAAGGCTCCTCATTTTGCACATGCTCCTTCAAGAATGTTGTACAGGTCGGAATCACTGAACTTGCCTGTGATGACCAGGCAAAACCCCTTGAAAGCTATGCCAGTAATAAGGACACCTGCACCGAAGAAACCTAAAGCCAGGGACCCTAATAAGAGGAACATGACTTATGAAGAGAAGCAAAAACTCAGTACAAATCTTCAGAGTTTACCTTCGGAAAAGCTTGACAGCATTGTCCAGATAATAAAAAAGAACACCGCACTTCCTCAACATGATGATGAGATTGAAGTTGATATTGATAGCGTTGATATAGAAACTCTTTGGGAACTTGATAGGTTTGTCACAAACTATAAAAAGAATTTGAGCAAGCATAAAAGGAAAGCCGCACTTGCTCAACAAGCAATGGTAGAAGCTGATGATGTTAATCAAGCTGTGAACCCATCAAGCTCCATTCTTGAGGCCCCCAAAGAAAATAAAACGAATGACAATAGTACACCCCTTAATCAAGGAGGGAGAGAAGATAATGCTAGTAGTTCAAGCAGCTCTAGCAGTGATTCTGGATCGTCTTCAAGTGATTCCGATAGTGATAGTTCGTTAAGTTTGTTGCAGATGATCAAAAGCTGA 1890 42.28 MDPGILDPDKISKGKSKWGDDSKVYTRRSKTTTTVTAVSSPTPTPTVTATSLPTTRSASPTTTPNNAQTLATTEHVNSETTRRNLSPVVEAFDDSSVQNGQVFGNGVIKPVVVLVDGRVRINIRAAKASKNEIIELTETIKAELERVRGVAQRLEDKEAELTAVSTDVGIAGEGEGEGYNLMQYSSNDLVDRRALVRINSEMGTDYMDRRALMRINSEVGSVTDSGVRPFRHLSVSVMSNSHGVGEFAEKEKRTPKANQYYRNSDFLLSKDRLPPESNKRRKSNSGRKHSKDSGYGRVFRNCNNLLQRLMKHKFGWVFNEPVNAKQLGLHDYHDIIKHPMDLGTIKSRLAQNFYKSPMEFADDVRLTFRNAMTYNPKGQDVHLMAEQLSESFEERWGVIESEYNPDLRYGMIYDANTPTPTSRKAPHFAHAPSRMLYRSESLNLPVMTRQNPLKAMPVIRTPAPKKPKARDPNKRNMTYEEKQKLSTNLQSLPSEKLDSIVQIIKKNTALPQHDDEIEVDIDSVDIETLWELDRFVTNYKKNLSKHKRKAALAQQAMVEADDVNQAVNPSSSILEAPKENKTNDNSTPLNQGGREDNASSSSSSSSDSGSSSSDSDSDSSLSLLQMIKS* 630
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Taer1g05448 629 Gene3D - 276 405 IPR036427 GO:0005515(InterPro)
Taer1g05448 629 MobiDBLite consensus disorder prediction 28 82 - -
Taer1g05448 629 MobiDBLite consensus disorder prediction 572 629 - -
Taer1g05448 629 Pfam Bromodomain extra-terminal - transcription regulation 477 537 IPR027353 -
Taer1g05448 629 MobiDBLite consensus disorder prediction 269 295 - -
Taer1g05448 629 Coils Coil 536 556 - -
Taer1g05448 629 Pfam Bromodomain 302 386 IPR001487 GO:0005515(InterPro)
Taer1g05448 629 PRINTS Bromodomain signature 363 382 IPR001487 GO:0005515(InterPro)
Taer1g05448 629 PRINTS Bromodomain signature 345 363 IPR001487 GO:0005515(InterPro)
Taer1g05448 629 PRINTS Bromodomain signature 313 326 IPR001487 GO:0005515(InterPro)
Taer1g05448 629 PRINTS Bromodomain signature 329 345 IPR001487 GO:0005515(InterPro)
Taer1g05448 629 PANTHER OSJNBA0053K19.4 PROTEIN 21 621 - -
Taer1g05448 629 MobiDBLite consensus disorder prediction 1 27 - -
Taer1g05448 629 Coils Coil 126 160 - -
Taer1g05448 629 MobiDBLite consensus disorder prediction 1 82 - -
Taer1g05448 629 Gene3D - 470 549 IPR038336 -
Taer1g05448 629 ProSiteProfiles Bromodomain profile. 310 382 IPR001487 GO:0005515(InterPro)
Taer1g05448 629 ProSiteProfiles NET domain profile. 467 547 IPR027353 -
Taer1g05448 629 SUPERFAMILY Bromodomain 280 404 IPR036427 GO:0005515(InterPro)
Taer1g05448 629 SMART bromo-6 291 401 IPR001487 GO:0005515(InterPro)
Taer1g05448 629 CDD Bromo-plant1 298 396 IPR037377 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Taer1g05448 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Taer Taer-Chr1:46003322 Taer1g05448 Taer-Chr1:49831443 dispersed
Taer Taer-Chr1:49831443 Taer9g00717 Taer-Chr9:5204813 dispersed
Taer Taer-Chr1:49831443 Taer4g01793 Taer-Chr4:16307487 transposed