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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Taer1g05453 ATGAAGGGGCGTTGCACCAAGTCCTTAAAGATGTTATCAAACCATGGTGTCAACGATCTGCACGATGATGGTTTCGAGGGTTCAGTGAATGAGAATCACATTTTTAGAGAGGTCTTCTTTGGGCATGAAAGTAGTAAAAGTGATAGAATTAATACAAAGTATGATGTAACCTGGGCAATAAATTTTGAAAATGACAAAAGGATCCCTAAAGACGTCTCATTTTGTTCAGACAGTGGAAGTTCAGTCATGACAAATCAGGAAGACTTTCAGAATATGAAGGAAGATTCTGGACAGGGTGGCATCTCTGAAGAGTTTGCTTTATTTACTAGACATGCCCCTGATTTTGAAGTTAAGCGAAGAAAGATGTTACCTGAAGAACATTTTGAGACTAAATCTTATCCAGAAAAGGTAGTTATTTCTTCTATTTCATCAAAAGTAGACAATTTTAAGTCAAATGATCAGAAAACATATGATTCAAGTAATAAGGCTATTCCACCACCAGTTCAACTTTCCAAGAAAAGATGGAAAGAGACTTCCTTTATTGAACTAGATAAAGATGAATTATTAATTCCCCCTGAAGGTTCTGCCACAAATCCTAGACCTACGTTGCGTTATTACACATATTGCTTACTTAAAGCAGCAGGGTGGTTAATTGGGAGGCGTAACAGAAAAGGACCTGGGGAATACATCTTCAAAACACCCGAAGGAAGGCCGATTCGGGAATTTCGTAGATCTTGGAACATGTGTGGTCAAAGGTTAGTCAAACATGCAAGATTTATTGGTGTATGTAACGGCACACGGTGGACTGGTTTGACTCACTTTTGGTCTGATCTTTCTAAAGCATTGACCGAGGTTGAAAAATTGAGAAATCTGGGAACTGCAACTGCCTTAGCTCATTGGTGGTACTTGCTTGATCCCTTTGCCAAAGTGGTATTCATTGACAGAAGTCTTCGTTATTTGAAACAAGGGAAAGAAGTCAAAGTAGTGAGAAGTGTGGTTAACCATTCTGGAAGTTCCAGGTTCAATAAGCGTCAAAAGAGGAAAAAAGTAAATTGTCACCTTAAAGATGATGATATTTTGCTCTCGGCTATATTAACTAACCGATCTACTAGCAAACGTTTGGGTGTTAAAAGAAAGTACAAGAGTAAAAAAGGTAGTTGCAGATTGCTTCCATCCAGTTCTGGAAAATGTTTTGGGTTAGGAGCAAGAACAGTATTATCTTGGTTGATTGATCGTGCGGTTATTTGCGTCAATGAAGTGATCCAGTACATGAACCCACAGGATGATTCAGTGGTGAAGCATGGTGTAGTGACTCGAAATGGCATATTGTGTCGGTGCTGTATGAAAGTGCTCTCTGTTTCAGAATTCAAAAGTCATGCTGGTTTTAGTATGAAGTGTTCATGTTTGAATCTTTATATGGAATCTGGAAAATCATTCACTTTATGTCAACTGGAAGCTTGGTCATCTGAATACAAGATTAGGAAGGGTACCAGAAGTGTTGTACAAGAGTATAAGATTGATCAAAGTGATGATAGTTGTGGTCTTTGTGGTGATGGTGGTGAGTTGATATGCTGTGATAACTGCCTTTCCACATTTCATCAAGCATGCTTGTCTACTACACAGGAGCTACCTGAAGGCAATTGGTACTGTTCAATGTGTTGTTGCAATAGTTGCGGGAATGTAGTCAGTCATATCCAGACTTCAGTCTCTAATGCTCAGAAATGTTTGCAATGCGAACGGATATATCATGAGGAATGCATCATAGAGAACAGAATCCAGAAAACTTTAGTGGGTCCTACCTGGTTCTGTGGAGAAACGTGTGAACAGATCCATACAAGTCTTGATTCCCAGATTGGATGTTCAAACCCAATTTCTGATGGTTACTCGTGGACCCTACTGAGGTGTATTCAAGGTGACCAAAAGGTTAATTCTGGTCAAAACTTTGTCGCCCTTAAAGCAGAATGCAATCTAAAGCTAGCTGTTGCCCTGACATTAATGGAAGAATGCTTTCTACCCATGGTGGATACAAGAACAGGCATTCATATGCTACCCCATGTAGTGTACAATATGGGATCAGAATATACCCGTCTTAATTATGAGGGATTTTACACGATGGTCTTGGAGAAAGATGATGTTTTACTCTGTGTAGCATCCTTGAGGATTCATGGTGCAACGGTTGCAGAGGTGCCCCTCATCGCAACATGTAGCAGAAATAGGCGCCAAGGAATGTGTAGGCGCCTCATGAATGCTATTGAAGAGATGTTGAAGTCATTCAAAGTTGAGAAGTTAGTGGTATCTGCCATCCCGGACTTAGTCGATACATGGACCAATGGCTTCGGTTTCACTCCCTTGGAAGCCGATGAAAAGAACAGCCTGGACAACATCAATCTCATGGTGTTACCGGGAACCATTTGGCTCAAGAAGCCCATGTACCAGGGATCAACCCAGAGCACTCAATTTCTTGGTACATCAATGGAAGCTGTATCTTCAGCCATGAATGGTGATCTCCTAGAAGCTGCATCTCTGGTGGATATAGTACCGGTTTATGACACAGAATTCTTGCAAGAATTGGAAACCTATATGTCAAGATGGTAG 2595 40.5 MKGRCTKSLKMLSNHGVNDLHDDGFEGSVNENHIFREVFFGHESSKSDRINTKYDVTWAINFENDKRIPKDVSFCSDSGSSVMTNQEDFQNMKEDSGQGGISEEFALFTRHAPDFEVKRRKMLPEEHFETKSYPEKVVISSISSKVDNFKSNDQKTYDSSNKAIPPPVQLSKKRWKETSFIELDKDELLIPPEGSATNPRPTLRYYTYCLLKAAGWLIGRRNRKGPGEYIFKTPEGRPIREFRRSWNMCGQRLVKHARFIGVCNGTRWTGLTHFWSDLSKALTEVEKLRNLGTATALAHWWYLLDPFAKVVFIDRSLRYLKQGKEVKVVRSVVNHSGSSRFNKRQKRKKVNCHLKDDDILLSAILTNRSTSKRLGVKRKYKSKKGSCRLLPSSSGKCFGLGARTVLSWLIDRAVICVNEVIQYMNPQDDSVVKHGVVTRNGILCRCCMKVLSVSEFKSHAGFSMKCSCLNLYMESGKSFTLCQLEAWSSEYKIRKGTRSVVQEYKIDQSDDSCGLCGDGGELICCDNCLSTFHQACLSTTQELPEGNWYCSMCCCNSCGNVVSHIQTSVSNAQKCLQCERIYHEECIIENRIQKTLVGPTWFCGETCEQIHTSLDSQIGCSNPISDGYSWTLLRCIQGDQKVNSGQNFVALKAECNLKLAVALTLMEECFLPMVDTRTGIHMLPHVVYNMGSEYTRLNYEGFYTMVLEKDDVLLCVASLRIHGATVAEVPLIATCSRNRRQGMCRRLMNAIEEMLKSFKVEKLVVSAIPDLVDTWTNGFGFTPLEADEKNSLDNINLMVLPGTIWLKKPMYQGSTQSTQFLGTSMEAVSSAMNGDLLEAASLVDIVPVYDTEFLQELETYMSRW* 865
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Taer1g05453 864 ProSiteProfiles Zinc finger PHD-type profile. 510 556 IPR019787 -
Taer1g05453 864 Pfam PHD-finger 513 553 IPR019787 -
Taer1g05453 864 ProSitePatterns Zinc finger PHD-type signature. 513 553 IPR019786 -
Taer1g05453 864 SUPERFAMILY FYVE-PHD zinc finger 501 554 IPR011011 -
Taer1g05453 864 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 700 784 IPR016181 -
Taer1g05453 864 SMART PHD-3 512 554 IPR001965 -
Taer1g05453 864 SMART PHD-3 555 607 IPR001965 -
Taer1g05453 864 CDD NAT-SF 706 766 - -
Taer1g05453 864 Pfam Tify domain binding domain 435 485 IPR032308 -
Taer1g05453 864 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 498 576 IPR013083 -
Taer1g05453 864 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 661 811 IPR000182 GO:0016747(InterPro)
Taer1g05453 864 Gene3D - 677 797 - -
Taer1g05453 864 PANTHER PHD FINGER PROTEIN 12 145 820 - GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0140110(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Taer1g05453 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
162196 Taer1g05453 Taer7g00080
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Taer Taer-Chr1:49853660 Taer7g02681 Taer-Chr7:19756087 dispersed
Taer Taer-Chr1:49853660 Taer7g01489 Taer-Chr7:9730445 wgd
Taer Taer-Chr1:49853660 Taer7g00080 Taer-Chr7:583255 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Taer1g00258 . 110 925 PHD Transcription Factor family AT1G05380 43.276 0.0 617.0
Taer1g00467 ACH 45 594 PHD Transcription Factor family AT3G24440 36.116 5.25e-112 345.0
Taer1g00592 ACH 26 1025 PHD Transcription Factor family AT5G58610 35.879 0.0 630.0
Taer1g00730 . 1542 1704 PHD Transcription Factor family AT5G35210 85.276 1.02e-85 289.0
Taer1g00875 . 226 973 PHD Transcription Factor family AT2G36720 44.941 0.0 645.0
Taer1g01359 WGDA 27 160 PHD Transcription Factor family AT5G58610 29.63 3.23e-10 61.6
Taer1g01370 WGDA 721 807 PHD Transcription Factor family AT3G14980 30.275 5.11e-08 55.1
Taer1g01712 . 26 167 PHD Transcription Factor family AT5G58610 29.371 6.26e-06 46.6
Taer1g01765 . 27 160 PHD Transcription Factor family AT5G58610 28.261 1.03e-08 54.7
Taer1g01874 . 615 661 PHD Transcription Factor family AT5G22260 44.681 1.86e-06 50.1
Taer1g03685 . 684 760 PHD Transcription Factor family AT4G14920 36.585 1.28e-07 54.7
Taer1g04999 ACH,WGDA 684 760 PHD Transcription Factor family AT4G14920 32.927 3.02e-07 53.5
Taer1g05161 . 39 264 PHD Transcription Factor family AT5G57380 22.581 1.33e-09 59.7
Taer1g05262 . 371 1595 PHD Transcription Factor family AT5G12400 38.633 0.0 820.0
Taer1g05453 ACH 539 1031 PHD Transcription Factor family AT3G14980 53.831 4.55e-174 533.0
Taer1g05546 . 673 730 PHD Transcription Factor family AT4G14920 35.484 3.52e-06 47.4
Taer1g06395 ACH 647 719 PHD Transcription Factor family AT5G36670 39.744 1.38e-07 53.1
Taer2g01426 . 1 504 PHD Transcription Factor family AT2G18880 34.953 6.64e-92 292.0
Taer3g00457 ACH 749 945 PHD Transcription Factor family AT2G36720 36.453 1.51e-42 154.0
Taer3g00459 . 733 973 PHD Transcription Factor family AT2G36720 35.628 3.21e-54 186.0
Taer3g00460 . 884 950 PHD Transcription Factor family AT2G36720 44.928 3.04e-14 65.9
Taer3g00462 . 750 946 PHD Transcription Factor family AT2G36720 37.931 5.28e-50 173.0
Taer3g00463 . 866 945 PHD Transcription Factor family AT2G36720 51.25 4.76e-26 99.8
Taer3g00464 . 884 950 PHD Transcription Factor family AT2G36720 44.928 7.54e-14 68.2
Taer3g00466 . 705 973 PHD Transcription Factor family AT2G36720 44.238 3.92e-79 263.0
Taer3g00469 . 519 987 PHD Transcription Factor family AT2G36720 40.466 6.98e-126 390.0
Taer4g00108 ACH,WGDA 141 973 PHD Transcription Factor family AT2G36720 42.254 0.0 628.0
Taer4g00708 . 130 272 PHD Transcription Factor family AT5G57380 28.221 1.93e-08 55.5
Taer4g00919 . 565 1000 PHD Transcription Factor family AT5G58610 45.339 9.83e-123 394.0
Taer4g02518 ACH 627 923 PHD Transcription Factor family AT1G05380 44.295 1.80e-83 275.0
Taer4g02520 . 627 923 PHD Transcription Factor family AT1G05380 37.919 7.73e-65 219.0
Taer4g02521 . 693 963 PHD Transcription Factor family AT5G58610 33.21 2.25e-42 154.0
Taer4g02522 . 828 923 PHD Transcription Factor family AT1G05380 52.083 1.26e-30 112.0
Taer4g02523 . 627 923 PHD Transcription Factor family AT1G05380 44.444 1.18e-83 273.0
Taer4g03091 . 351 973 PHD Transcription Factor family AT5G58610 31.484 1.39e-89 298.0
Taer4g03155 . 1558 1595 PHD Transcription Factor family AT5G12400 50.0 5.22e-10 54.3
Taer5g01054 WGDA 678 760 PHD Transcription Factor family AT4G14920 31.818 1.50e-07 52.8
Taer5g01080 . 15 661 PHD Transcription Factor family AT5G22260 34.462 6.52e-114 355.0
Taer5g01109 . 130 264 PHD Transcription Factor family AT5G57380 25.49 2.42e-09 58.9
Taer5g01785 . 130 217 PHD Transcription Factor family AT5G57380 31.313 2.23e-09 57.8
Taer5g02822 . 130 247 PHD Transcription Factor family AT5G57380 24.812 5.03e-11 65.1
Taer6g01907 . 38 833 PHD Transcription Factor family AT3G53680 52.398 0.0 832.0
Taer6g03768 . 684 760 PHD Transcription Factor family AT4G14920 35.366 1.87e-07 54.3
Taer7g00080 ACH 1 1053 PHD Transcription Factor family AT3G14980 42.805 0.0 770.0
Taer7g00686 ACH 46 531 PHD Transcription Factor family AT3G24440 46.99 3.41e-139 414.0
Taer7g01489 . 572 1031 PHD Transcription Factor family AT3G14980 55.315 1.80e-176 536.0
Taer7g01653 . 1546 1704 PHD Transcription Factor family AT5G35210 28.902 5.40e-13 70.5
Taer7g01719 . 145 261 PHD Transcription Factor family AT5G57380 30.769 8.17e-10 59.3
Taer7g02265 . 81 662 PHD Transcription Factor family AT5G22260 30.695 2.76e-83 275.0
Taer7g02681 . 15 983 PHD Transcription Factor family AT4G14920 44.724 0.0 756.0
Taer8g01074 . 130 272 PHD Transcription Factor family AT5G57380 28.221 1.88e-08 55.5
Taer8g01075 . 130 272 PHD Transcription Factor family AT5G57380 28.221 1.68e-08 55.5
Taer8g01611 . 318 404 PHD Transcription Factor family AT5G22260 38.043 1.82e-07 52.4
Taer8g01758 . 1545 1704 PHD Transcription Factor family AT5G35210 33.75 3.03e-21 96.7
Taer8g02531 . 13 402 PHD Transcription Factor family AT5G22260 33.57 5.89e-65 226.0
Taer8g02556 . 15 672 PHD Transcription Factor family AT5G22260 50.669 0.0 627.0
Taer9g00155 WGDA 164 978 PHD Transcription Factor family AT2G36720 43.081 0.0 636.0
Taer9g01505 ACH 312 938 PHD Transcription Factor family AT1G05380 44.969 9.26e-166 526.0
Taer11g00270 WGDA 28 160 PHD Transcription Factor family AT5G58610 28.676 2.74e-07 52.0
Taer11g00285 . 716 819 PHD Transcription Factor family AT3G14980 29.412 1.43e-07 50.1
Taer11g00287 . 721 801 PHD Transcription Factor family AT3G14980 30.769 3.41e-08 56.6
Taer12g00327 . 130 272 PHD Transcription Factor family AT5G57380 28.221 1.59e-08 55.5