AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Taer1g05464 ATGCCTTTTTCCTCCAACTTCATTCGTTCATCTTCCATACTAATTTTTCTATGTTTTCAACTCTTTTCCTCCATTTCTGAAGCTGTTGTGCCAGCTTCAGAAACATTCACTTACGTAAACCAAGGTGAATTTGGCGATTACATCGTCGAGTACAATGCAAATTATCGTTTTCTTGAACCTTTTAGCAGCCCATTCCAACTTTGTTTCTATAACACCACCCCTAACGCATTCACTCTAGCTCTCCGTATGGGTACCGTTCGATCCGAATCCCTCATGCGTTGGGTTTGGGAAGCTAACCGTGGAAACCCGGTTCGAGAAAACGCCACCCTCACATTCGGTACTGACGGAAACCTGGTCCTAGCAGATGCGGATGGTCGGGTTGTTTGGCAAACGAATACCGCCAACAAGGGCGTGGTTGGTTTTCAAGTGCTTCCCACTGGTAACATGGTTCTTCATGACGGTAAAGGTAATTTCTTATGGCAAAGCTTTGATTCACCAACGGACACTTTGTTGGTGGGTCAAACACTACGAGCTGGTGGTCAGAATAAACTTGTGAGCCGCCTTTCGGAGGCGAACAATGTCGACGGACCGTATAGTTTGGTGATGGAGCCAAAAGGGTTATCCATGTATTACAAAAGTCCGAACTCGCCTCGACCAATGCTTTACTGGTCATCTAGCGAATGGTTCACTGTTGACAAGGGTAGTTTGATCAATCTAACTCTTACGTCGAACCCCGACACGGATGAGGGGTTTCGTTATTACTTGACGTTCGATTACTTCAGCACAGACCCAACATCATCTGGGAGCCGCAACATGGCATTATCGCGGTACAACAACACATTATCGTATCTTCGATTAGGGATAGACGGAAACCTTAGATTCTACACGTATAACCCAAATATTCAAGCGGGGGCATGGGACGAGGTGTACACGTTTCTTGATCGGGATTCAAGGGAAGGCGAGTGTCAGTTACCGGGGCGATGTGGGAAGTTTGGGCTATGTGAGGATAGCCAGTGTGTGGCGTGCCCGACACCGAGTGGGCTAAGTGGTTGGAGCAAAGATTGTGATGTGAAGAAGGTGACGTCTTGCAAAAGTAGCGAGTTTGGGTACTACAAGCTTGAAGGTGTTGATCATTTTATGATCAAGTACACGAGGGGTGACGGGCCGACGAAACAGAGCGATTGCGAGAGCAAATGCACCAAGGATTGTAAGTGTATGGGGTACTTCTATCACACTGATCGTTCCAGGTGTTGGATTGCTTACGATTTGAAAACACTAACACGTGTTGGTAACTCGACTCATTTGGCGTATATCAAAACACCCAACAAGTAG 1332 46.62 MPFSSNFIRSSSILIFLCFQLFSSISEAVVPASETFTYVNQGEFGDYIVEYNANYRFLEPFSSPFQLCFYNTTPNAFTLALRMGTVRSESLMRWVWEANRGNPVRENATLTFGTDGNLVLADADGRVVWQTNTANKGVVGFQVLPTGNMVLHDGKGNFLWQSFDSPTDTLLVGQTLRAGGQNKLVSRLSEANNVDGPYSLVMEPKGLSMYYKSPNSPRPMLYWSSSEWFTVDKGSLINLTLTSNPDTDEGFRYYLTFDYFSTDPTSSGSRNMALSRYNNTLSYLRLGIDGNLRFYTYNPNIQAGAWDEVYTFLDRDSREGECQLPGRCGKFGLCEDSQCVACPTPSGLSGWSKDCDVKKVTSCKSSEFGYYKLEGVDHFMIKYTRGDGPTKQSDCESKCTKDCKCMGYFYHTDRSRCWIAYDLKTLTRVGNSTHLAYIKTPNK* 444
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Taer1g05464 443 CDD PAN-AP-plant 362 441 - -
Taer1g05464 443 PIRSF SLG 5 443 IPR035446 -
Taer1g05464 443 SMART blect-4 49 166 IPR001480 -
Taer1g05464 443 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 52 441 IPR051343 -
Taer1g05464 443 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 224 IPR036426 -
Taer1g05464 443 Pfam D-mannose binding lectin 95 181 IPR001480 -
Taer1g05464 443 CDD B-lectin 49 166 IPR001480 -
Taer1g05464 443 ProSiteProfiles Bulb-type lectin domain profile. 33 164 IPR001480 -
Taer1g05464 443 Gene3D - 31 165 IPR036426 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Taer1g05464 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Taer Taer-Chr1:49941474 Taer1g05492 Taer-Chr1:50143984 dispersed
Taer Taer-Chr1:49936877 Taer1g05464 Taer-Chr1:49941474 tandem
Taer Taer-Chr1:49941474 Taer1g05465 Taer-Chr1:49943865 tandem