AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Taer1g05466 ATGGCTACTTATACTTCTTCTCTTTTTTTTATCTTCTTCTACTTCATCTTCCGATCATTATCCATCTCCATTGCCATTGTTCCTATGAACGAAACCTTTCACTACGTCAACCAAGGCGACTTTGGAATCTATGATTCCGAATACGCCCCATCTTACCGCGCCCTTCCTCCGTTTACGTCCCCATTCCAAATATGTTTCTACAACACCACCCCAAATGCATACACTCTCGCTCTCCGCATGGGAACCAGACGTGATGGCTCCGTCATGCCATGGGTCTGGGAAGCCAATCGAGGCAAACCAGTCCGTGAAAACGCCACATTCTCATTAGACTCGGATGGAAACCTCATCCTTGCCGATGTAGACGGTCGAATCGTGTGGCAAACCAACACCGCCAATAAAGGCGTTGTTGGTTTTGCCATACTTTCTGATGGTAACATTGTTCTTCGTGACTCGAAGGGTAACTTTGTCTGGCAAAGTTTCGACTCCCCTACTGACACTATCTTGGTCGGCCAAACTCTGAGGGTGAGAGAAGGGCCGACCAAGCTGGTTAGTAGGAAGTCGATAAATAGCAACACTAATGGGATTTATAGCTTTGTAATTGAACCTAAAAGATTAGCTTTGTATTACAAGAACAACATGCGTTATTGGTCGTCCTCGTTCACCGAAGTAAATAGAAAAAATGTGAATATTGTAAATGCTACGTTAAGAATTGTGGAAACTGAATATGAAGAGAACAATTTTCACGGCCTCTTGTGTAACATTGAAAACAGTCAGTCAATATTCGATATTCCTTATTTAGATTTGGGTACAGTTCGGTATAATAGCTCGTTATCGTATCTTCGATTGGGCATCGACGGGAACCTAAGACTCTACACTTACCGCGCAAGGGTGCGGGGAAATGCGTGGAGCTTGTTGTACACTTTGTTTGATAAGCGTGAGGATGAGTTTCGGATGATTTTTGAAGACGAGTGTCAGCAACCAAATCGGTGTGGGAAGTTTGGGCTTTGTGAGGACAGTCAATGTGTCGGATGCCCGACGCCAAACGGGGTGTTTGCGTGGAGTAAAGATTGTGACACAAAGTCACCGGGTTGTAATGTGAGTGAGTTTAAATATTATGAGCTCAAAGGGGTTGACCATTTTACGGTTAAGTATACGGACGGGATTGGACCCGTGACACGGGGGGATTGCGAGAGCAAATGCTCGAAGGATTGCAAGTGTTTGGGTTACTTTTATCGCACAGATAAGTCGAGGTGTTGGATCGCTTACGACTTGAAAACATTGACGAGGGTCGGGAAGTCCACTCATTTGGCGTACATCAAAACACCGGCTCGCTAG 1335 45.09 MATYTSSLFFIFFYFIFRSLSISIAIVPMNETFHYVNQGDFGIYDSEYAPSYRALPPFTSPFQICFYNTTPNAYTLALRMGTRRDGSVMPWVWEANRGKPVRENATFSLDSDGNLILADVDGRIVWQTNTANKGVVGFAILSDGNIVLRDSKGNFVWQSFDSPTDTILVGQTLRVREGPTKLVSRKSINSNTNGIYSFVIEPKRLALYYKNNMRYWSSSFTEVNRKNVNIVNATLRIVETEYEENNFHGLLCNIENSQSIFDIPYLDLGTVRYNSSLSYLRLGIDGNLRLYTYRARVRGNAWSLLYTLFDKREDEFRMIFEDECQQPNRCGKFGLCEDSQCVGCPTPNGVFAWSKDCDTKSPGCNVSEFKYYELKGVDHFTVKYTDGIGPVTRGDCESKCSKDCKCLGYFYRTDKSRCWIAYDLKTLTRVGKSTHLAYIKTPAR* 445
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Taer1g05466 444 CDD PAN-AP-plant 365 442 - -
Taer1g05466 444 CDD B-lectin 46 163 IPR001480 -
Taer1g05466 444 PIRSF SLG 1 444 IPR035446 -
Taer1g05466 444 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 60 441 IPR051343 -
Taer1g05466 444 ProSiteProfiles Bulb-type lectin domain profile. 40 161 IPR001480 -
Taer1g05466 444 SMART blect-4 46 163 IPR001480 -
Taer1g05466 444 Pfam D-mannose binding lectin 92 176 IPR001480 -
Taer1g05466 444 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 217 IPR036426 -
Taer1g05466 444 Gene3D - 64 161 IPR036426 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Taer1g05466 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Taer Taer-Chr1:49952780 Taer1g05492 Taer-Chr1:50143984 dispersed
Taer Taer-Chr1:49943865 Taer1g05466 Taer-Chr1:49952780 tandem
Taer Taer-Chr1:49952780 Taer1g05467 Taer-Chr1:49955775 tandem