AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Taer1g05526 ATGGCTTCATCTTCATCAATTTCAACTCCTACTTGGAGTAATCCCAGAACAAGACTTTTAACTCCATCAAAAAGCACATCGATTTCGTTATGTAAAACATCTAGTTCAAGAATTAAGCACAAATCGATCGTTTCGGCGCTTCAAACTCCTTCGATTCTTCAAATTCCAAAACAAAGTCCGATTAAAACGATTGAATTGCCATCACAGTCGTCTAATTCGTCTTCTTTGCCACCAGCGCAACAAAATTGGAACGTGTTTCAGAAATTTGCAGCAATGGCATTGGACGCCATTGAAGACGGGTTAAAAGCGAGAGAGAAGCTACACCCGTTGCCGAAAACAGCAGACCCGAATGTACAAATCGCCGGAAATTTCTCTCCGGTACCGGAACAACCTGTACGACATAATTTGCCAATTGTCGGAAAGATCCCGGAGTATATTCAAGGGGTTTATTTACGAAATGGAGCTAATCCGTTATTCGAACCAACTTCCGGCCACCATTTGTTCGACGGAGACGGTATGATTTACTCCGTTAAGTTCGACAACGGGTCGGCAAGCTACGCCTGCCGGTTTACCGAAACGCAGCGACTTGTTCAAGAACGCGCGATCGGTAAACCGGTGTTTCCGAAGGCGATCGGAGAGCTTCATGGACATTCCGGTATTGCAAAGTTGTTATTGTTTTACGCTCGTGGGATGTGTGGTTTGATTGATCACACTAAAGGAATTGGAGTGGCGAACGCGGGGTTGGTGTATTTTAACAACCGGCTTTTAGCTATGTCCGAAGACGATTTGCCTTACCACGTCAGAATTACATCTTCCGGCGACTTGAAAACCGCCGGAAGGTATAATTTTGACGGGCAGTTGGACTCAACGATGATAGCGCACCCGAAACTCGACCCAGTTTCGGGTGAGTTATTTGCGTTGAGTTATGATGTTATTAAGAAGCCGTATTTGAAATACTTCCGGTTTTCGCCTGATGGGAAGAAATCGAAAGATGTATCGATTGATTTGGAAGTGCCTACTATGGTTCATGATTTTGCTATCACGGAGAATTATGTTGTAGTGCCGGATCATCAAGTGGTTTTCAAGATGTCGGAAATGATTAGCGGTGGATCGCCGGTGGTGTATGATAAAGAGAAGGTTTCACGTTTTGGGGTTTTGGATAAATATGCGGAAAACGGGTCGGGTATTAAATGGGTTGAAGTTCCGGATTGTTTCTGTTTTCATCTCTGGAACGCATGGGAAGAACCCGAATCCGATGAAGTGGTTGTAATCGGATCCTGCATGACTCCGGCAGACTCAATTTTCAACGAGTGTAACGAAGAGCTAAAAAGTGTTTTATCCGAAATCCGTTTGAATTTAAAAACCGGAAAATCGACACGCCGGAGTATAATTTCGGCCGAAAACGACGTGAATTTGGAAGCAGGGATGGTAAACAAAAACCTCCTCGGGCGGAAATCAAAATACGCATATCTGGCTATTGCGGAGCCATGGCCGAAAGTGTCGGGTTTCGCCAAAGTCGATCTTTCGACTGGCGAAACAAAGAAATTCATCTACGGAGATGAAAAGTACGGGGGAGAGCCTCTGTTTCTCCCCCGAGACGGTAACTCAAACGCGGAAGACGATGGTCACATACTAGCATTCGTTCACGATGAAGCAACGTGGAAATCGGAGCTTCAAATCGTGAATGCAATGACAATGGAATTGGAGGCAATAGTGAAGCTGCCTTCAAGGGTACCGTACGGGTTTCACGGAACGTTTATTAACGCCAAAGATTTGGCAACTCAGGCGTGA 1791 45.11 MASSSSISTPTWSNPRTRLLTPSKSTSISLCKTSSSRIKHKSIVSALQTPSILQIPKQSPIKTIELPSQSSNSSSLPPAQQNWNVFQKFAAMALDAIEDGLKAREKLHPLPKTADPNVQIAGNFSPVPEQPVRHNLPIVGKIPEYIQGVYLRNGANPLFEPTSGHHLFDGDGMIYSVKFDNGSASYACRFTETQRLVQERAIGKPVFPKAIGELHGHSGIAKLLLFYARGMCGLIDHTKGIGVANAGLVYFNNRLLAMSEDDLPYHVRITSSGDLKTAGRYNFDGQLDSTMIAHPKLDPVSGELFALSYDVIKKPYLKYFRFSPDGKKSKDVSIDLEVPTMVHDFAITENYVVVPDHQVVFKMSEMISGGSPVVYDKEKVSRFGVLDKYAENGSGIKWVEVPDCFCFHLWNAWEEPESDEVVVIGSCMTPADSIFNECNEELKSVLSEIRLNLKTGKSTRRSIISAENDVNLEAGMVNKNLLGRKSKYAYLAIAEPWPKVSGFAKVDLSTGETKKFIYGDEKYGGEPLFLPRDGNSNAEDDGHILAFVHDEATWKSELQIVNAMTMELEAIVKLPSRVPYGFHGTFINAKDLATQA* 597
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Taer1g05526 596 PANTHER BETA-CAROTENE DIOXYGENASE 108 588 IPR004294 GO:0009570(PANTHER)|GO:0010436(PANTHER)|GO:0016121(PANTHER)|GO:0016702(InterPro)
Taer1g05526 596 MobiDBLite consensus disorder prediction 1 26 - -
Taer1g05526 596 Pfam Retinal pigment epithelial membrane protein 129 587 IPR004294 GO:0016702(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Taer1g05526 K09840 9-cis-epoxycarotenoid dioxygenase [EC:1.13.11.51]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Taer Taer-Chr1:50518929 Taer9g00800 Taer-Chr9:5691307 dispersed
Taer Taer-Chr11:24043858 Taer1g05526 Taer-Chr1:50518929 transposed
Taer Taer-Chr6:3920815 Taer1g05526 Taer-Chr1:50518929 transposed
Taer Taer-Chr1:50518929 Taer3g03109 Taer-Chr3:80266629 wgd