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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Taer1g05568 ATGGGTTACAATTGTGATCATTGTGGGGAAGGAAGATCAATGGTGTATTGTAGATCAGATGCAGCCTACTTATGTTTATCGTGTGATCGTATTGTTCATTCTGCAAATGCATTATCAAAACGGCATTCAAGAACACTTGTATGTGATAGATGCAATTCACAGCCTGCATTGGTTAGATGTATAGAAGAAAAAGTCTCACTTTGTCTAAATTGTGATTGGGTTGGTCATAACGGGTCAACAAAACACAGTAAACAGACATTGAATTGCTATTCGGGTTGCCCTTCAGCTGAAGAACTTTCGTCAATTTGGTCATTTATGTCAGATTCAGATTTTGTTAACGGTTCTACTTGTGAGCAAGAAATGGGTTCAATGAGCATTGCTGATAATAGCCAAGGACCTTTTAGAAGCAGCACCAATAATGATAACAATCAAGATTTACTTGCAAGTGGAAATAATTCAAATATTTGGACAGGTCCTTCGAGTGTTCATGTTGATTCTTTTCCATCTAAGACATCACATTTAGAGACAAAAGGACCTGAACCTGTTCTCAATGATGACAATGAGTTTTATGTTGACTATAGTATGGATGAAGTTGACTTGAGCATTGAGAATTATGAAGAACTCTTTGGTGTAGGCCATAATGATCCTGAACATCTTTTTGCAAAAGACGGGATTGATAGTTTGTTTGGTGGTGCTGAATCTTCATGTGCCGGAAAGGAACCTTCAACAGGACATGCAAATCAAGCACAACCCGCGTGCAGCAATGCAGCATCAGCAGACTCATTAATCAGCTGTAAAACAGAACCAAACCCTGGTTATGCAAGGCAACACTCGAATATCTCATTCTCAAGTCTCACTGGGGAAAGCAGTGCGGGTGAATATCAAGACTGTGGGGCTTCTTCAATGCTTCTTATGGGCGAGCCACCATGGTACAACTCAGGCCCTGGGCCCGGTCCGGTTCGTGATCAAACTATCACCGCTTCTGGTAGCAGAAGTGATGCAGTATTACGTTACAAGGAAAAAAAGAAAATGCGAAAATTTGACAAGAGAGTAAGATATGCTACACGAAAGGAGCGGGCGGATGTAAGAAAGCGGGTGAAAGGGCGGTTTGTGAAGGTGGGCGACGCTTATGATTATGACCCGTTGAGTCAAACCCGAAGCTTTTAG 1167 41.56 MGYNCDHCGEGRSMVYCRSDAAYLCLSCDRIVHSANALSKRHSRTLVCDRCNSQPALVRCIEEKVSLCLNCDWVGHNGSTKHSKQTLNCYSGCPSAEELSSIWSFMSDSDFVNGSTCEQEMGSMSIADNSQGPFRSSTNNDNNQDLLASGNNSNIWTGPSSVHVDSFPSKTSHLETKGPEPVLNDDNEFYVDYSMDEVDLSIENYEELFGVGHNDPEHLFAKDGIDSLFGGAESSCAGKEPSTGHANQAQPACSNAASADSLISCKTEPNPGYARQHSNISFSSLTGESSAGEYQDCGASSMLLMGEPPWYNSGPGPGPVRDQTITASGSRSDAVLRYKEKKKMRKFDKRVRYATRKERADVRKRVKGRFVKVGDAYDYDPLSQTRSF* 389
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Taer1g05568 388 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 377 - -
Taer1g05568 388 CDD Bbox1-BBX-like 5 47 IPR049808 -
Taer1g05568 388 MobiDBLite consensus disorder prediction 125 154 - -
Taer1g05568 388 CDD Bbox1-BBX-like 47 84 IPR049808 -
Taer1g05568 388 ProSiteProfiles Zinc finger B-box type profile. 5 47 IPR000315 GO:0008270(InterPro)
Taer1g05568 388 ProSiteProfiles CCT domain profile. 331 373 IPR010402 GO:0005515(InterPro)
Taer1g05568 388 SMART bboxneu5 48 87 IPR000315 GO:0008270(InterPro)
Taer1g05568 388 SMART bboxneu5 5 47 IPR000315 GO:0008270(InterPro)
Taer1g05568 388 Pfam CCT motif 331 372 IPR010402 GO:0005515(InterPro)
Taer1g05568 388 ProSiteProfiles Zinc finger B-box type profile. 43 87 IPR000315 GO:0008270(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Taer1g05568 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Taer Taer-Chr1:50799032 Taer8g02145 Taer-Chr8:61823642 dispersed
Taer Taer-Chr1:33906688 Taer1g05568 Taer-Chr1:50799032 transposed
Taer Taer-Chr8:7347295 Taer1g05568 Taer-Chr1:50799032 transposed
Taer Taer-Chr1:50799032 Taer7g01532 Taer-Chr7:10060690 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Taer1g01156 . 182 278 C2C2-CO-like Transcription Factor family AT2G24790 36.082 1.21e-11 63.2
Taer1g01646 WGDA 318 385 C2C2-CO-like Transcription Factor family AT5G24930 39.706 3.27e-12 61.6
Taer1g01649 . 238 332 C2C2-CO-like Transcription Factor family AT5G15850 37.895 9.54e-13 65.9
Taer1g01656 WGDA 1 331 C2C2-CO-like Transcription Factor family AT1G75540 39.71 5.35e-67 209.0
Taer1g02028 . 194 276 C2C2-CO-like Transcription Factor family AT2G24790 40.964 3.12e-11 61.6
Taer1g02739 . 5 221 C2C2-CO-like Transcription Factor family AT3G21150 26.923 1.67e-13 65.5
Taer1g03038 . 11 328 C2C2-CO-like Transcription Factor family AT2G47890 43.684 3.53e-91 275.0
Taer1g03716 WGDA 4 94 C2C2-CO-like Transcription Factor family AT5G54470 55.914 5.61e-28 103.0
Taer1g04608 WGDA 280 400 C2C2-CO-like Transcription Factor family AT1G68520 39.333 5.24e-22 94.0
Taer1g05568 . 1 372 C2C2-CO-like Transcription Factor family AT3G07650 54.926 8.12e-136 391.0
Taer1g05709 . 1 197 C2C2-CO-like Transcription Factor family AT1G75540 53.202 6.14e-64 198.0
Taer1g05943 . 335 380 C2C2-CO-like Transcription Factor family AT5G24930 50.0 4.31e-09 54.3
Taer2g02146 . 11 283 C2C2-CO-like Transcription Factor family AT3G02380 44.695 1.01e-79 246.0
Taer2g02809 . 1 329 C2C2-CO-like Transcription Factor family AT1G75540 42.151 5.58e-66 208.0
Taer3g02665 . 49 406 C2C2-CO-like Transcription Factor family AT5G24930 47.52 3.93e-90 275.0
Taer3g02946 . 3 213 C2C2-CO-like Transcription Factor family AT4G27310 36.245 1.99e-32 116.0
Taer3g03069 ACH 1 299 C2C2-CO-like Transcription Factor family AT1G78600 51.923 9.27e-94 278.0
Taer5g00349 WGDA 1 98 C2C2-CO-like Transcription Factor family AT5G54470 55.556 1.08e-31 114.0
Taer5g00695 . 12 398 C2C2-CO-like Transcription Factor family AT2G33500 37.875 4.69e-75 238.0
Taer5g01392 . 1 196 C2C2-CO-like Transcription Factor family AT1G75540 51.232 3.45e-60 189.0
Taer6g01866 . 267 329 C2C2-CO-like Transcription Factor family AT5G57660 44.444 5.22e-11 61.6
Taer6g02476 . 284 331 C2C2-CO-like Transcription Factor family AT5G57660 52.083 2.84e-10 58.2
Taer7g00055 ACH 1 194 C2C2-CO-like Transcription Factor family AT1G75540 50.0 2.46e-57 182.0
Taer7g01513 . 1 299 C2C2-CO-like Transcription Factor family AT1G78600 47.588 3.64e-80 243.0
Taer7g01532 . 1 373 C2C2-CO-like Transcription Factor family AT5G48250 55.668 5.00e-137 394.0
Taer8g00242 . 4 355 C2C2-CO-like Transcription Factor family AT5G57660 44.819 1.78e-92 281.0
Taer8g00601 . 1 373 C2C2-CO-like Transcription Factor family AT5G48250 56.579 7.04e-136 390.0
Taer8g01424 . 258 331 C2C2-CO-like Transcription Factor family AT5G57660 47.297 2.61e-12 63.5
Taer8g02145 . 4 399 C2C2-CO-like Transcription Factor family AT2G33500 38.411 5.15e-83 259.0
Taer8g02350 . 76 273 C2C2-CO-like Transcription Factor family AT1G68190 31.325 9.72e-22 92.4
Taer9g01885 . 185 270 C2C2-CO-like Transcription Factor family AT2G24790 39.535 3.43e-11 60.1
Taer9g03014 . 118 278 C2C2-CO-like Transcription Factor family AT2G24790 30.435 3.22e-11 62.0
Taer10g01158 . 9 347 C2C2-CO-like Transcription Factor family AT3G02380 51.031 3.39e-119 348.0
Taer10g02201 . 270 386 C2C2-CO-like Transcription Factor family AT5G24930 34.426 1.83e-11 63.5
Taer11g00719 WGDA 125 319 C2C2-CO-like Transcription Factor family AT3G02380 29.612 5.60e-14 67.0
Taer11g00765 WGDA 1 331 C2C2-CO-like Transcription Factor family AT1G75540 43.059 3.01e-78 240.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Taer CCT 2.9e-15 CL0281 TF C2C2-CO-like