AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Taer1g05641 ATGGGTACTGAAACAACGATGGTCGATTTAGGTATACTTGTGTCTAACGCATTACTGAAGACACACGCTTTTGATCACGCAGTTTCATCTCTTCTTCTCTTTAATTCGTCTCAACTAATCCTAATTCGTTCATCGACCATCATACACTTGTTAAAGATGTGTACTCTATTCAAATCAAGCTTGCTCTTATTGTTCATTTGGTTTGTTCTGGCGCCTACTGCGTATTCGGGTCCTAATGGTGGATTGGTTAGAATTGGACTTAAGAAGAGGAAAATCAACCAATTGAATCGAATTGGACGTGCTGGCTCTGATGAAAGGTATGCTAGACGAAGCTACGGTGACCATGGTAGTTTTGGGGGTTCGGGTGGTGATGTTATTGCTCTAGAAAATTACATGGATGCTCAGTATTATGGTGAGATTGGTGTTGGTACTCCACCTCAAAAGTTTACAGTCATTTTTGACACTGGAAGTTCTAATCTGTGGGTGCCTTCGGCAAAGTGCTACTTCTCGGTAGCCTGCCTTGTTCACTCAAAGTATAAGTCAAGCCAGTCAAGTTCATATAAGAAAAATGGGAAATCTGCTGCAATTCAATATGGAACTGGCTCCATCTCTGGATTTTTTAGCCAAGATGTCATCACAGTTGGTGATCTTGTCGTGAAAGAACAAGATTTTATAGAGGCAACCAAAGAGCCTGGTGCTACGTTTGTTGCAGCCAAGTTTGATGGTATACTTGGACTTGGGTTTCAAGAAATCTCTGTCGGGGATGCTGTTCCTGTTTGGTACAACATGATTAAACAAGATCTTGTTCAAGAACCTGTATTTTCATTTTGGCTTAATCGCAATGCTGAGGAGGACAAAGGAGGTGAGCTTGTTTTTGGTGGACTTGACCATAAACATTTCAAGGGTAAACACACATATGTCCCTGTAACTCAGAAGGGCTATTGGCAGTTTGAAATGGGTGATGTCTTGATTGGTGATAAAACAACTGGATTTTGTACCGGTGGTTGTGCAGCTATTGCTGATTCTGGAACTTCTTTGTTGGCTGGTCCAACGGAGGTTATCACTCAAATCAATCAAGCCATTGGTGCTGCTGGGGTTGTGAGCCGACAATGCAAGGCATTGATCAATCAGTATGGAAAAACTATGCTTGAGATGCTACTATATGAGACACAACCTAAAAGAATCTGCTCTCAAATAAAGTTATGCTCCTTTGATGGTTCTCATGATACTAGCATGATAATTGAGAGTGTGGTTGACAAGAATAATGGAAAATCAAATGGCGTACGTGATCAGATGTGTAATCTCTGCGAGATGGCTGTTGTTTGGTTGGAAACCAAAATACAGCGAAATGAAACTGAAGATGAAATAATTAACCATGTTGATCAGCTGTGTGATCGGTTGCCAAGTCCAATGGGAGAAACCGGAGTTGATTGCAACAGTCTTGCATCCATGCCCACTGTTGCATTTATCATTGGTGGTAGAACTTTTGAGCTCTCCCCTGAACAGTATATCCTGAAAATTGGTGAGGGAGCAGCAGCACAATGCATCAGTGGATTTACTGCTCTTGATGTGGCACCTCCTCGTGGGCCCCTGTGGATCCTCGGAGACATTTTTATGGGTAAATACCATACAGTGTTTGACTATGGTAAATCACGAGTCGGGTTTGCAGAAGCAGTTTGA 1680 42.02 MGTETTMVDLGILVSNALLKTHAFDHAVSSLLLFNSSQLILIRSSTIIHLLKMCTLFKSSLLLLFIWFVLAPTAYSGPNGGLVRIGLKKRKINQLNRIGRAGSDERYARRSYGDHGSFGGSGGDVIALENYMDAQYYGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSVACLVHSKYKSSQSSSYKKNGKSAAIQYGTGSISGFFSQDVITVGDLVVKEQDFIEATKEPGATFVAAKFDGILGLGFQEISVGDAVPVWYNMIKQDLVQEPVFSFWLNRNAEEDKGGELVFGGLDHKHFKGKHTYVPVTQKGYWQFEMGDVLIGDKTTGFCTGGCAAIADSGTSLLAGPTEVITQINQAIGAAGVVSRQCKALINQYGKTMLEMLLYETQPKRICSQIKLCSFDGSHDTSMIIESVVDKNNGKSNGVRDQMCNLCEMAVVWLETKIQRNETEDEIINHVDQLCDRLPSPMGETGVDCNSLASMPTVAFIIGGRTFELSPEQYILKIGEGAAAQCISGFTALDVAPPRGPLWILGDIFMGKYHTVFDYGKSRVGFAEAV* 560
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Taer1g05641 559 SUPERFAMILY Acid proteases 62 558 IPR021109 -
Taer1g05641 559 Gene3D Acid Proteases 83 294 IPR021109 -
Taer1g05641 559 FunFam Lysosomal aspartic protease 122 364 - -
Taer1g05641 559 ProSiteProfiles Peptidase family A1 domain profile. 136 556 IPR033121 -
Taer1g05641 559 Pfam Saposin-like type B, region 1 432 468 IPR007856 GO:0006629(InterPro)
Taer1g05641 559 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 151 162 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Taer1g05641 559 FunFam Lysosomal aspartic protease 412 558 - -
Taer1g05641 559 ProSiteProfiles Saposin B type domain profile. 366 406 IPR008139 -
Taer1g05641 559 Pfam Eukaryotic aspartyl protease 135 558 IPR033121 -
Taer1g05641 559 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 74 558 IPR001461 GO:0004190(InterPro)|GO:0004190(PANTHER)|GO:0006508(InterPro)|GO:0006508(PANTHER)
Taer1g05641 559 SUPERFAMILY Saposin 367 468 IPR011001 -
Taer1g05641 559 PRINTS Pepsin (A1) aspartic protease family signature 142 162 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Taer1g05641 559 PRINTS Pepsin (A1) aspartic protease family signature 532 547 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Taer1g05641 559 PRINTS Pepsin (A1) aspartic protease family signature 288 301 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Taer1g05641 559 PRINTS Pepsin (A1) aspartic protease family signature 338 349 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Taer1g05641 559 ProSiteProfiles Saposin B type domain profile. 429 519 IPR008139 -
Taer1g05641 559 Gene3D - 366 468 - -
Taer1g05641 559 CDD phytepsin 126 557 IPR033869 GO:0004190(InterPro)
Taer1g05641 559 Pfam Saposin-like type B, region 2 370 402 IPR008138 -
Taer1g05641 559 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 338 349 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Taer1g05641 559 Gene3D Acid Proteases 295 558 IPR021109 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Taer1g05641 K08245 phytepsin [EC:3.4.23.40]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Taer Taer-Chr1:51325402 Taer5g01861 Taer-Chr5:57487816 dispersed
Taer Taer-Chr1:51325402 Taer5g01419 Taer-Chr5:13974230 wgd
Taer Taer-Chr1:51325402 Taer7g01581 Taer-Chr7:10357334 wgd