AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Taer1g05662 ATGGCTTCTTCCAGTTGCAGCAGCTTCATCATCTATTTATTGCTTATACAATTTTGCAGTGCTCGTGAAATCGTGGACAAGAACCAAAACAACGATCGCAACGAAGAAACTCATATAAACTTATACGGGAAGAACGGTGTTTATGATTTGGATCCGGCTCTAAATGTGTTCTTTCATGTACACGACTTATATTCAGGCAAAAAAATGCCAGTTTATTTTGCGGTTAATGATCCTTCAACAACTCCCCGGTTATTAACAACAGAACAATCCAACTCAATACCATTTTCCTCAAAAAACCTCCCATATCTTCTACAACTTACATCATTACCCGAGGGTTCCCCGCAAGCTCTAGCCATGGAACAAACACTAAAACAGTGCGAGCTAGACGCAACCCCTGGCGAGACCAGGTTTTGTGCTAGCTCGCTAGAGTCCATGCTGGACTCAACACGCGAGATACTAGGTATGGTCAAACTGAAAGCGTTGACCACCAATATCCGCAACTTGTCAAGTACCCTTTTACAAGGTTACACATTTTTAAAGGAGCCAGTGGAGATTAATGTTAATGATATGGTGGCTTGTCACACCATGGCTTACCCTTATGCAGTATATTATTGTCATGGTCAAAAGGGGTATAATAGGGTATTTGAGATATCTTTAGGGGGTGAAAATGGAAATTTAGTGGATGCCATTGCTGTTTGCCACATGGACACTTCCATGTGGGATAGTGACCACGTGGCATTTCGTGTGCTCGGAGGCCAGCCTGGCAGTTCGCCGGTGTGTCATTTTCTTCCGGCTGATAATATTGTGTGGATACCATCACCGTAG 825 43.27 MASSSCSSFIIYLLLIQFCSAREIVDKNQNNDRNEETHINLYGKNGVYDLDPALNVFFHVHDLYSGKKMPVYFAVNDPSTTPRLLTTEQSNSIPFSSKNLPYLLQLTSLPEGSPQALAMEQTLKQCELDATPGETRFCASSLESMLDSTREILGMVKLKALTTNIRNLSSTLLQGYTFLKEPVEINVNDMVACHTMAYPYAVYYCHGQKGYNRVFEISLGGENGNLVDAIAVCHMDTSMWDSDHVAFRVLGGQPGSSPVCHFLPADNIVWIPSP* 275
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Taer1g05662 274 ProSiteProfiles BURP domain profile. 57 273 IPR004873 -
Taer1g05662 274 PANTHER BURP DOMAIN PROTEIN USPL1-LIKE 35 273 IPR044816 -
Taer1g05662 274 Pfam BURP domain 56 271 IPR004873 -
Taer1g05662 274 SMART BURP-2 55 273 IPR004873 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Taer1g05662 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
162207 Taer1g05662 Taer3g03278
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Taer Taer-Chr12:30945415 Taer1g05662 Taer-Chr1:51485797 dispersed
Taer Taer-Chr1:51485797 Taer3g03274 Taer-Chr3:81762157 dispersed
Taer Taer-Chr1:51485797 Taer1g05664 Taer-Chr1:51511249 proximal
Taer Taer-Chr1:51485797 Taer3g03271 Taer-Chr3:81713234 wgd
Taer Taer-Chr1:51485797 Taer5g01347 Taer-Chr5:12897471 wgd