AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Taer1g05889 ATGACGGTTCAAATCACTCGTAATTTAACCTTAGCGTTGAGTTTCCGCAGAGCCATCTCCTGTTCTTCTTCATCAATTTACTCTCCTCCGATCGATCATCATCTCGTTAAGTTTCGTAGGAACAATCATCTCTTTCGTCGGTTCAATCAATCGGCTGTTGTTACAGTACCAGACTCATCCGGCGTGAAGACTATGGGTTCGCAATCGGCGGAAGTGGAGTGGCCAGCTAACAAAGTTAGGGATTCGTTTATAAAGTTTTTTGAAGAAAGGAACCATGTGTATTGGAAATCAAGTCCGGTTGTTCCAGTCAATGATCCAACTCTTCTGTTTGCTAATGCTGGAATGAATCAATTTAAGCCCATTTTCTTGGGTACTGTTGATCCTAACACCTCCTTAAGCAAACTGACTCGTGCCTGCAACACCCAGAAGTGCATCCGTGCTGGCGGGAAGCATAATGATCTTGATGATGTCGGCAAAGACACTTATCATCACACCTTTTTTGAAATGCTTGGTAACTGGTCATTTGGTGATTATTTTAAAAAGGAGGCCATTGGTTGGGCTTGGGAACTTCTTACAGAGGTTTACAAGTTACCTACTGATCGAATATATGCTACTTATTTTGGTGGTGATGAGAAATTGGGCCTTCCTGCTGATAATGAAGCTAGAGATATATGGCTCAAATACCTGCCATCTGCACGAGTTTTGCCTTTTGGTTGTAAAGATAATTTCTGGGAGATGGGTGACACTGGACCTTGTGGACCCTGTACTGAAATTCACTTTGATAGAATTGGTGGTCGTGATGCAGCTGAGTTGGTTAATAATGACGATCCTACGTTGATTGAAATATGGAATAATGTGTTTATTCAGTTTAACAGGGAAGCTGATGGTTCCTTAAAACCTTTGCCGGCAAAACATGTGGATACTGGAATGGGTTTTGAAAGGTTGACCTCAATTCTTCAGAACAAAATGAGCAACTATGATACTGACGTTTTTTTACCGATTTTTGATGCTATTCAAGAGGCAACTGGTGCTAGACCATATTCAGGCAAAGTGGGCCGAGATGACGTGGATGGGATTGACATGGCATACAGAGTTGTTGCTGACCACATCAGAACTCTTTCTTTTGCCATTGCAGATGGCTCTCGTCCAGGAAATGAAGGACGTGAATATGTTCTGAGGCGCATTCTTCGCCGAGCTGTACGCTATGGAACAGAAGTACTGAAAGCAAAACAAGGATTTTTCAATGGACTGGTTAAAGTTGTGGTGGATGTAATGGGCCATGTTTTTCCTGAGCTAAAAGAACAAGAGGCAAACATTAGAGAGATTATATCCGAAGAGGAAGCAACTTTTGGGAGGACTTTACTTCATGGAATTGAGAAGTTTAAGAAGTCAGCTCAAGATGTTAAGGGAAAGAAATTTAGTGGTCAAGCTGCATTTGTTTTGTGGGATACCTATGGATTTCCACTGGATTTGACTCAGATCATGGCAGAAGAAAGAGACTTGGAGGTTGATGTTGATGAGTATAATCAGGCTATGGATGAAGCTAGAGAAAGATCAAGAAGCGCCCAGAATAAGCAAGCTGCTGTTACAATTGTCATGGATGCAGATGCCACCTCAGCACTGCATAAGAAAGGGGTGGCTACAACAAATGATAGTTTCAAGTTTACATGGTTTAAGGACCACAAAAGTGTGATAAAAGCCATTTACACAGGTTCTGAGTACGTGGAACGTGCTAATGCTGGGGATGAAGTTGGCATAATTCTTGACAGCACAAGTTTTTATGCTGAACAAGGTGGCCAGATATATGATATTGGACTACTTGGAGGCCCATCTGGATCATTTGAAGTCTGTAACGTTCAAGTTTATGGTGGCTTTGTGCTTCATCTTGGTAAAATTAGTGGGGAGTCGGCCCAATTTAATGTGGGGGATGAAGTAATTTGTAAGGTGGACTATGAAAGGCGTCAACGCATTGCTCCTAATCATACATGTACACACATGTTAAATTTTGCTCTCAGGGAAGTACTTGGGAGTCATGTTGACCAAAAAGGATCTATTGTTCTTCCAGAAAAATTAAGGTTTGACTTCTCCCATGGGAAGCCTGTAAAACCCGATGACCTTCGTAGAATTGAATCAATTGTGAATGAACAAATTAAAGCTGAGCTGGTGGTTTCTGCAAAGGAGGCAAGTCTTGCTGATGCAAAAAGAGTAAACGGGTTGCGGGCAGTTTTTGGCGAGGTATATCCTGATCCTGTCAGGATTGTCGCGGTTGGTCAAAAAGTGGAAGATTTACTGGCTGATCCTGAAAATGAGAAATGGCTATCCATCTCTGCAGAACTCTGTGGAGGGACCCATATTTCAAATACACGTGAGGCAAAAGCATTTGCTCTTTTGTCTGAGGAGGGAATTGCTAAGGGGATTAGGAGAGTTACTGCAGTGACAACAGATTATGCTTTTGATGCTATTAAAAAGGCATCTGAGCTTGAAGTGGAAGTTGATCAGGCAGCTAAGCTGGAAGGAAGCCTTCTTGAACAGAAAGTGACTTCTTTAAATGGTCAGTTAGAGACTGCTTCAATTCCAACAGCCAAAAAGGCTGATCTTAAAGCAAAAATCACCATCCTTCAGAATCAAGTAATAAAAGCAAAAAAGAAGACTGCTGAAGAGAACATACGAAAAGCTATTGACGCGGCCACTGAGGCGGCAGAAATTGCATCTTCTGAGGGGAAATCCTTCTGCATTTCACATGTTGGTGTAGGGTCAGATACTACTGCTATTCGTGAAGCAGTTGTTAAAGTCATGGAGCAAAAGGGAATGGCTGTGATGGTTTTTAGCACTGATGAGCAATCAAAGAAGGCATTAGTTTGTGCGGGTGTGCCTGAAAAAAGTGATAAAAGCAACAATTTGAAGGTTTTAGAGTGGTTGAAGGCAGCATTGAAACCACTTGAAGGCAAAGGTGGTGGAGGGAAAGGTGGTCTTGCGCAAGGCCAGGGACCCGATATAAAACATGTGGATGAAGCAATTGACATTGCGAAGTCATTTGCTGCTCTCAAACTGGGCTGA 3057 42.3 MTVQITRNLTLALSFRRAISCSSSSIYSPPIDHHLVKFRRNNHLFRRFNQSAVVTVPDSSGVKTMGSQSAEVEWPANKVRDSFIKFFEERNHVYWKSSPVVPVNDPTLLFANAGMNQFKPIFLGTVDPNTSLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIGWAWELLTEVYKLPTDRIYATYFGGDEKLGLPADNEARDIWLKYLPSARVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGGRDAAELVNNDDPTLIEIWNNVFIQFNREADGSLKPLPAKHVDTGMGFERLTSILQNKMSNYDTDVFLPIFDAIQEATGARPYSGKVGRDDVDGIDMAYRVVADHIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGTEVLKAKQGFFNGLVKVVVDVMGHVFPELKEQEANIREIISEEEATFGRTLLHGIEKFKKSAQDVKGKKFSGQAAFVLWDTYGFPLDLTQIMAEERDLEVDVDEYNQAMDEARERSRSAQNKQAAVTIVMDADATSALHKKGVATTNDSFKFTWFKDHKSVIKAIYTGSEYVERANAGDEVGIILDSTSFYAEQGGQIYDIGLLGGPSGSFEVCNVQVYGGFVLHLGKISGESAQFNVGDEVICKVDYERRQRIAPNHTCTHMLNFALREVLGSHVDQKGSIVLPEKLRFDFSHGKPVKPDDLRRIESIVNEQIKAELVVSAKEASLADAKRVNGLRAVFGEVYPDPVRIVAVGQKVEDLLADPENEKWLSISAELCGGTHISNTREAKAFALLSEEGIAKGIRRVTAVTTDYAFDAIKKASELEVEVDQAAKLEGSLLEQKVTSLNGQLETASIPTAKKADLKAKITILQNQVIKAKKKTAEENIRKAIDAATEAAEIASSEGKSFCISHVGVGSDTTAIREAVVKVMEQKGMAVMVFSTDEQSKKALVCAGVPEKSDKSNNLKVLEWLKAALKPLEGKGGGGKGGLAQGQGPDIKHVDEAIDIAKSFAALKLG* 1019
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Taer1g05889 1018 Coils Coil 491 525 - -
Taer1g05889 1018 Gene3D - 650 826 - -
Taer1g05889 1018 FunFam Alanine--tRNA ligase, cytoplasmic 73 323 - -
Taer1g05889 1018 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 327 526 IPR018162 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006419(InterPro)
Taer1g05889 1018 Pfam tRNA synthetases class II (A) 78 653 IPR018164 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Taer1g05889 1018 Gene3D - 575 649 - -
Taer1g05889 1018 Gene3D Bira Bifunctional Protein; Domain 2 75 323 IPR045864 -
Taer1g05889 1018 Gene3D - 905 1013 - -
Taer1g05889 1018 FunFam Alanine--tRNA ligase 905 1013 - -
Taer1g05889 1018 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 74 823 IPR018165 GO:0003676(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Taer1g05889 1018 FunFam Alanine--tRNA ligase, cytoplasmic 650 825 - -
Taer1g05889 1018 SUPERFAMILY ThrRS-AlaRS common domain 649 821 IPR018163 GO:0000166(InterPro)
Taer1g05889 1018 SMART tRNA-SAD-4 751 810 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Taer1g05889 1018 Pfam DHHA1 domain 866 1012 IPR003156 GO:0003676(InterPro)
Taer1g05889 1018 CDD AlaRS-core 76 322 - -
Taer1g05889 1018 SUPERFAMILY Translation proteins 580 649 IPR009000 -
Taer1g05889 1018 PANTHER ALANYL-TRNA SYNTHETASE 65 1014 IPR050058 GO:0002161(PANTHER)|GO:0004813(PANTHER)|GO:0005739(PANTHER)|GO:0006419(PANTHER)|GO:0009507(PANTHER)
Taer1g05889 1018 Hamap Alanine--tRNA ligase [alaS]. 74 1017 IPR023033 GO:0004813(InterPro)
Taer1g05889 1018 FunFam Alanine--tRNA ligase 548 648 - -
Taer1g05889 1018 NCBIfam alanine--tRNA ligase 78 996 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Taer1g05889 1018 Coils Coil 863 895 - -
Taer1g05889 1018 SUPERFAMILY Class II aaRS and biotin synthetases 75 326 IPR045864 -
Taer1g05889 1018 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 751 809 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Taer1g05889 1018 PRINTS Alanyl-tRNA synthetase signature 307 320 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Taer1g05889 1018 PRINTS Alanyl-tRNA synthetase signature 364 380 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Taer1g05889 1018 PRINTS Alanyl-tRNA synthetase signature 388 401 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Taer1g05889 1018 PRINTS Alanyl-tRNA synthetase signature 152 163 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Taer1g05889 1018 PRINTS Alanyl-tRNA synthetase signature 280 291 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Taer1g05889 K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5248503 Taer Taer1g05889 Taer-Chr1:53202364 Taer3g02640 Taer-Chr3:76769805