AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Taer1g05930 ATGGCATCTGCCTTTCTCTCAAGAACAACAATATTCGCACATCGTTTCGTTTCATCTTCTTTAATCACTCAAAACCCCCAAAAATTAGCTTCACTTTTCTTCAAGAAACCAATTCAATCGTGGGCTGGTGCAACGCGTACGACATATAGGTGTCCTACTTTCGTTCGTGGTCATATGGCTACAAGTGGGTCTGGATCTACAGCTTTTTTTTCAACGCGGTCCATGTCGACTGGGGAGCCTGTTGTTTCAGTTGACTGGCTCCATGCCAATCTGCGTGAGCCTGATTTGAAGGTGTTGGATGCATCCTGGTACATGCCTGATGAACAGAGAAATCCACTCCAGGAGTACCAGGTTGCCCATATTCCTGGTGCTCTTTTCTTTGATGTAGATGGGATATCAGATCGAACTACTAATCTGCCACACATGTTGCCATCTGAGGAAGCATTTGCTGCTGCTGTTTCTGCCCTTGGTATTGAAAACAAAGACGGAGTTGTTGTTTATGATGGTAAAGGAATCTTCAGTGCTGCCCGTGTCTGGTGGATGTTTCGAGTTTTTGGACATGATAGAGTATGGGTTTTAGACGGAGGCCTTCCCAGATGGCGTGCGTCAGGATTTGATGTTGAATCTAGTGCTTCAAGTGATGCAATTTTGAAAGCTAGTGCTGCCAGCGAGGCAATAGAGAAAGTATACCAAGGCCAGCCTGTTGGTCCAGTTACATTTGAAACAAAATATCAGCCGCATCTTGTTTGGACACTTGAACAGGTTAAAAAGAACGCTGAGGACCAAACACATCAACACATAGATGCTCGATCAAAAGCCAGGTTTGATGGTGTTGCAGCTGAGCCCCGAAAAGGAATCAGAAGTGGTCATGTGCCTGGGAGTAAGTGCATTCCTTTTGCCCAGATGTTAGACAGCTCACTAACACTGCTATCTGCAGACCAGCTCAAGAACAAGTTTGAACAAGAGGGTATCACATTGGACAAACCTGTCATGACTTCATGTGGAACTGGAGTTACTGCATGCATTCTTGCATTGGGACTTCATCGACTTGGGAAGATAGATGTTCCGGTTTATGATGGATCTTGGACTGAATGGGGAGCACAAGAAGATACTCCGGTCGTAACATCAACTTCAACTTCTTGA 1143 45.14 MASAFLSRTTIFAHRFVSSSLITQNPQKLASLFFKKPIQSWAGATRTTYRCPTFVRGHMATSGSGSTAFFSTRSMSTGEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPLQEYQVAHIPGALFFDVDGISDRTTNLPHMLPSEEAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGFDVESSASSDAILKASAASEAIEKVYQGQPVGPVTFETKYQPHLVWTLEQVKKNAEDQTHQHIDARSKARFDGVAAEPRKGIRSGHVPGSKCIPFAQMLDSSLTLLSADQLKNKFEQEGITLDKPVMTSCGTGVTACILALGLHRLGKIDVPVYDGSWTEWGAQEDTPVVTSTSTS* 381
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Taer1g05930 380 Gene3D - 245 378 IPR036873 -
Taer1g05930 380 ProSiteProfiles Rhodanese domain profile. 260 374 IPR001763 -
Taer1g05930 380 SMART rhod-4 82 206 IPR001763 -
Taer1g05930 380 SMART rhod-4 250 371 IPR001763 -
Taer1g05930 380 SUPERFAMILY Rhodanese-Cell cycle control phosphatase 253 376 IPR036873 -
Taer1g05930 380 FunFam Sulfurtransferase 245 376 - -
Taer1g05930 380 ProSitePatterns Rhodanese signature 1. 116 127 IPR001307 GO:0004792(InterPro)
Taer1g05930 380 CDD TST-Repeat-1 81 204 - -
Taer1g05930 380 PANTHER THIOSULFATE SULFERTANSFERASE 77 377 IPR045078 GO:0004792(PANTHER)|GO:0005739(PANTHER)|GO:0016783(InterPro)
Taer1g05930 380 ProSiteProfiles Rhodanese domain profile. 92 209 IPR001763 -
Taer1g05930 380 CDD TST-Repeat-2 251 367 - -
Taer1g05930 380 Gene3D - 74 216 IPR036873 -
Taer1g05930 380 FunFam Sulfurtransferase 74 216 - -
Taer1g05930 380 ProSitePatterns Rhodanese C-terminal signature. 355 365 IPR001307 GO:0004792(InterPro)
Taer1g05930 380 SUPERFAMILY Rhodanese-Cell cycle control phosphatase 79 211 IPR036873 -
Taer1g05930 380 Pfam Rhodanese-like domain 251 367 IPR001763 -
Taer1g05930 380 Pfam Rhodanese-like domain 83 202 IPR001763 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Taer1g05930 K01011 thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Taer1g00636 . 17 145 Sulfurtransferasese/Rhodanese gene family AT5G03455 70.229 1.58e-66 197.0
Taer1g01176 . 181 348 Sulfurtransferasese/Rhodanese gene family AT5G23060 32.37 3.94e-19 87.8
Taer1g01377 . 1 464 Sulfurtransferasese/Rhodanese gene family AT5G55130 68.803 0.0 650.0
Taer1g02257 . 96 184 Sulfurtransferasese/Rhodanese gene family AT5G19370 35.294 1.61e-08 50.1
Taer1g02768 . 82 242 Sulfurtransferasese/Rhodanese gene family AT4G01050 42.593 4.58e-30 117.0
Taer1g05044 . 45 181 Sulfurtransferasese/Rhodanese gene family AT4G35770 59.854 8.85e-58 178.0
Taer1g05122 . 47 216 Sulfurtransferasese/Rhodanese gene family AT5G55130 29.73 2.63e-12 66.6
Taer1g05930 . 1 379 Sulfurtransferasese/Rhodanese gene family AT1G79230 72.063 0.0 579.0
Taer1g06124 . 16 581 Sulfurtransferasese/Rhodanese gene family AT1G09280 65.232 0.0 782.0
Taer1g06382 WGDA 9 144 Sulfurtransferasese/Rhodanese gene family AT2G17850 50.365 1.40e-43 139.0
Taer2g00213 . 18 438 Sulfurtransferasese/Rhodanese gene family AT1G17850 57.311 2.42e-172 487.0
Taer2g00994 . 6 461 Sulfurtransferasese/Rhodanese gene family AT2G40760 65.011 0.0 595.0
Taer4g01774 . 1 292 Sulfurtransferasese/Rhodanese gene family AT4G24750 64.068 2.15e-139 393.0
Taer7g01170 . 32 143 Sulfurtransferasese/Rhodanese gene family AT2G17850 51.786 3.82e-39 127.0
Taer7g02053 . 1 456 Sulfurtransferasese/Rhodanese gene family AT4G01050 52.248 1.95e-135 397.0
Taer7g02833 . 44 219 Sulfurtransferasese/Rhodanese gene family AT4G27700 79.545 1.62e-103 296.0
Taer8g01387 . 42 222 Sulfurtransferasese/Rhodanese gene family AT4G27700 80.11 2.03e-109 312.0
Taer10g01426 WGDA 24 149 Sulfurtransferasese/Rhodanese gene family AT2G17850 55.906 1.32e-44 142.0
Taer10g01622 . 351 581 Sulfurtransferasese/Rhodanese gene family AT1G09280 26.971 9.80e-16 73.6
Taer10g01623 . 344 564 Sulfurtransferasese/Rhodanese gene family AT1G09280 26.407 6.04e-14 68.6
Taer11g00198 . 94 299 Sulfurtransferasese/Rhodanese gene family AT5G19370 69.231 8.99e-107 310.0
Taer11g00498 . 72 261 Sulfurtransferasese/Rhodanese gene family AT5G55130 24.424 7.01e-11 62.0