AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Taer1g06025 ATGCCGAAAATTCCTCTTTCTGATTTGCCTGTACTGCCTCAGAATCACCTTCCTCTTCATATTCTACTGCAGAAAACTCGCGTTTCCTGCAACAACGATGCTCCGACTAATACAGAGGATATAATCTACTCCGGTGCGTATGCAGCAATGGGAGTTGATAACAGCTTAAGATTGGATGAGTTTAGGAAAAACTTTAAAGTTAAAGTGATCAAGCTTAGTGAAGAGGATATGGAGTTTGATTTGATTGGAATCGATGCTTCTATTGCGAATGCTTTTAGACGAATTCTTATTTCCGAGCTGCCTACTATGGCTATTGAGAAGGTTCTTGTTGCAAACAGTTCATCTGTGGTACAAGATGAAGTACTTGCCCACCGATTGGGTCTAATTCCAATTCAAGTCGATCCAAGGCTGTTCGAGTATATGTCAGAAAATGATGTTCCTAATGAGAAAAACACCATTGTTTTTAAACTCCATTTCAAGTGTGAGCGAAAATCTGGTGAACGCCGCACAGTGTACTCTCATGATCTTAAGTGGTTACCATCTGGCAGTGAATACATGCTGCCCACTGAAAATTCTTCAGACCCGTCATCAAAACCAAAAACATACACATCATTTACTTCCAGCCAAGATTCCTTGCCAGAATTTTTAAATAATCCTATCACTGTCACTCCTGGTATCATTATAACCAAACTTGGGCCTGGACAGGAAATTGAGCTAGAAGCACATGCTGTTAAAGGCCTTGGTCAAACACATGCCAAGTGGTCTCCTGTTGCCACTGCTTGGTACCGAATGCTCCCTGAGGTCATATTGCCGCGAGACATTATAGGTGAGGCTGCTCAGAAACTTGTAAACAAATGCCCAGTTAAAGTGTTCGACATTGAAGATATGGGTGATGGTGTGAAGAGGGCAACTGTGGCTAGACCAAGAGCTTGTACACTGTGTAGGGAATGCATCAGAGAGCCTGGATGGGAGAACAAGGTGGAGCTAAGACGCGTGAGAGATCATTTTATCTTCACAATTGAATCAACTGGAGCAATGCCACCAGAGGTGCTATTCACTGAAGCTGTCCAAATTTTAGAAGACAAGTGCGAAAGGGTTATAACCGTGCTCTCATAG 1116 42.65 MPKIPLSDLPVLPQNHLPLHILLQKTRVSCNNDAPTNTEDIIYSGAYAAMGVDNSLRLDEFRKNFKVKVIKLSEEDMEFDLIGIDASIANAFRRILISELPTMAIEKVLVANSSSVVQDEVLAHRLGLIPIQVDPRLFEYMSENDVPNEKNTIVFKLHFKCERKSGERRTVYSHDLKWLPSGSEYMLPTENSSDPSSKPKTYTSFTSSQDSLPEFLNNPITVTPGIIITKLGPGQEIELEAHAVKGLGQTHAKWSPVATAWYRMLPEVILPRDIIGEAAQKLVNKCPVKVFDIEDMGDGVKRATVARPRACTLCRECIREPGWENKVELRRVRDHFIFTIESTGAMPPEVLFTEAVQILEDKCERVITVLS* 372
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Taer1g06025 371 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 101 256 IPR036643 -
Taer1g06025 371 Hamap DNA-directed RNA polymerase subunit Rpo3 [rpo3]. 66 370 IPR022842 GO:0003899(InterPro)|GO:0006351(InterPro)
Taer1g06025 371 SMART rpoldneu2 76 369 IPR011263 GO:0003899(InterPro)|GO:0006351(InterPro)
Taer1g06025 371 Pfam RNA polymerase Rpb3-Rpb11 dimerisation domain 78 121 IPR011263 GO:0003899(InterPro)|GO:0006351(InterPro)
Taer1g06025 371 Pfam RNA polymerase Rpb3-Rpb11 dimerisation domain 321 363 IPR011263 GO:0003899(InterPro)|GO:0006351(InterPro)
Taer1g06025 371 FunFam RNA polymerase I subunit 43 102 252 - -
Taer1g06025 371 PANTHER DNA-DIRECTED RNA POLYMERASE 24 370 IPR050518 GO:0001054(PANTHER)|GO:0001056(PANTHER)|GO:0003899(PANTHER)|GO:0005666(PANTHER)|GO:0005736(PANTHER)
Taer1g06025 371 Gene3D - 67 362 IPR036603 GO:0006351(InterPro)|GO:0046983(InterPro)
Taer1g06025 371 SUPERFAMILY RBP11-like subunits of RNA polymerase 63 370 IPR036603 GO:0006351(InterPro)|GO:0046983(InterPro)
Taer1g06025 371 Gene3D - 102 252 IPR036643 -
Taer1g06025 371 Pfam RNA polymerase Rpb3-RpoA insert domain 122 253 IPR011262 GO:0003899(InterPro)|GO:0006351(InterPro)|GO:0046983(InterPro)
Taer1g06025 371 CDD RNAP-I-II-AC40 65 368 IPR033901 GO:0001054(InterPro)|GO:0001056(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Taer1g06025 K03027 DNA-directed RNA polymerases I and III subunit RPAC1
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Taer Taer-Chr1:54199138 Taer3g01790 Taer-Chr3:70429687 dispersed