AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Taer4g02289 ATGACTAGTTTCATGGCATTTAAGTTATCGTCTATCTCATCCGTTGTTCCTTCAGTTTCATTTTCCGCAAACAAATTCTTTCTTCCGGTGAAGTTGTCTCCACGCCGAACAACATTCCCAAGGATTTATGCATTTTCTAGTAATGATATCAAGGTTGGATCCAACATTGAAGTAGATGGGTCTCCTTGGAAAGTTCTAGAATTTCTTCATGTTAAGCCTGGTAAAGGGGCTGCTTATGTGAGGACTACGCTACGGAATCATATAACAGGGAACACTGTTGAGAAAACTTTCCGAGCTGGAAGCAAGATTGAACAAGCTGAGATCTCTAAGGAGACAAAACAATTCACATACAAGGATGGTTCGCAGTTTGTTTTCATGGATCTGACTTCATATGAGGAAGTTCGTCTTAACGAGTCAGATATGGGAGATAAGACAAAATGGCTAAAAGAAGGCATGGATTGCAATTTGCTATTTTGGAAGGGAAAGGTTATAGACTTTGAGCTCCCAATACAGGTTAGAGTGAAAATAGTTGATGTCGATCCTGGTGTGAAAGGTGACGCGGCTCAAGGTGGATCAAAACCAGCCACTGTGGAAACCGGCGCTGTTGTTTATGTTCCTTTGTTTGTAGACAGAGATCAAGAAATTATTGTGGATACAAGAACAGGACAGTATGTAAGTCGCGTATGA 687 40.9 MTSFMAFKLSSISSVVPSVSFSANKFFLPVKLSPRRTTFPRIYAFSSNDIKVGSNIEVDGSPWKVLEFLHVKPGKGAAYVRTTLRNHITGNTVEKTFRAGSKIEQAEISKETKQFTYKDGSQFVFMDLTSYEEVRLNESDMGDKTKWLKEGMDCNLLFWKGKVIDFELPIQVRVKIVDVDPGVKGDAAQGGSKPATVETGAVVYVPLFVDRDQEIIVDTRTGQYVSRV* 229
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Taer4g02289 228 Pfam Elongation factor P, C-terminal 172 227 IPR015365 GO:0005737(InterPro)|GO:0043043(InterPro)
Taer4g02289 228 CDD S1-EF-P-repeat-2 172 227 IPR015365 GO:0005737(InterPro)|GO:0043043(InterPro)
Taer4g02289 228 CDD S1-EF-P-repeat-1 114 169 IPR001059 GO:0003746(InterPro)|GO:0006414(InterPro)
Taer4g02289 228 Gene3D - 38 106 IPR014722 -
Taer4g02289 228 FunFam Elongation factor P 171 228 - -
Taer4g02289 228 SUPERFAMILY Translation proteins SH3-like domain 41 104 IPR008991 -
Taer4g02289 228 SUPERFAMILY Nucleic acid-binding proteins 108 172 IPR012340 -
Taer4g02289 228 ProSitePatterns Elongation factor P signature. 193 212 IPR013852 -
Taer4g02289 228 Gene3D - 171 228 IPR012340 -
Taer4g02289 228 PANTHER ELONGATION FACTOR P 21 228 IPR020599 GO:0003746(PANTHER)|GO:0005737(PANTHER)
Taer4g02289 228 SUPERFAMILY Nucleic acid-binding proteins 172 228 IPR012340 -
Taer4g02289 228 SMART Elong-fact-P-C-2 172 227 IPR015365 GO:0005737(InterPro)|GO:0043043(InterPro)
Taer4g02289 228 NCBIfam elongation factor P 46 228 IPR011768 GO:0003746(InterPro)|GO:0005737(InterPro)|GO:0006414(InterPro)
Taer4g02289 228 Gene3D - 107 169 IPR012340 -
Taer4g02289 228 FunFam Organellar elongation factor P 38 106 - -
Taer4g02289 228 Hamap Elongation factor P [efp]. 44 228 IPR011768 GO:0003746(InterPro)|GO:0005737(InterPro)|GO:0006414(InterPro)
Taer4g02289 228 Pfam Elongation factor P (EF-P) OB domain 114 164 IPR001059 GO:0003746(InterPro)|GO:0006414(InterPro)
Taer4g02289 228 FunFam Elongation factor P 107 170 - -
Taer4g02289 228 Pfam Elongation factor P (EF-P) KOW-like domain 46 103 IPR013185 -
Taer4g02289 228 PIRSF EF-P 43 228 IPR020599 -
Taer4g02289 228 SMART EFP-2 110 164 IPR001059 GO:0003746(InterPro)|GO:0006414(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Taer4g02289 K02356 elongation factor P
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5288688 Taer Taer4g00808 Taer-Chr4:6126853 Taer4g02289 Taer-Chr4:52658095