Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Taer4g02434	ATGTCGTTTAAGAGTATACTTCAGGACATGAAGGGGGATTTTGGGAGCATTTCTAGGAAAGGGTTTGGATTGAGGTCTAGGTCACAGAGAGTGGTGGAGGATAGATCAATGGTGGTTGTTGATGCGTTGAAGCAGAGCTGTTGGGCGAATATGCCGCCGGAGCTGTTACGCGATGTGTTGATGAGGATTGAGGCGTCTGAGTGTACGTGGCCTCCTCGGAAGAATGTCGTTTGTTGTGCTGGTGTTTGCAGGAATTGGAGGGAGATTATGAAAGATCTTGTTAAAATTCCAGAGTTTTCGGGCAAATTGACTTTTCCGATTTCGCTGAAGCAGCCTGGTCCAAGGGGCTCTCTAATACAATGCTTTATAAAGCGGAACCGAAGCGCTCAAACATATCATCTCTACCTTAGTTTAAATCAAGCAGCAAACGATGATGGGAAGTTTCTTCTTGCTGCAAAAAAATGTAGACGTGCTACATGCACAGATTATATAATTTCTTTGAATGCAGAAGATGTGTCGAAAGGCAGCAGCACTTACATAGGAAAGTTAAGATCAAACATTCTTGGAACTAAATTTACTGTATATGATGCTCAACCTCCACATGGTGGAGCTTTAACAACAAAATGCCGTTCCTTGAGGCCCGGGAGTATGAAGCGAGTGTCACCTAGGGTTCCTGCTGGAAATTACCCTGTTTCCAACATTTCATATGAACTTAATGTCTTGGGGTCCAGGGGACCAAGAAGGATGCAGTGTCTAATGAATGCAATCCCTGCAAGCGCTATGGACCCAGGGGGAGTGGCTCCAACTCAGACCGAGTTCCTTGTGAGCAATGTGGATACATTTTCATCTCTAGCTTTTTTCAGATCAAAATCTGCACGTATTGATAATTCCCAATCTGGAGCGTTATTGACCGGTCAAAACGACTCGATGCTCACGTTGAAGAACAAGGCGCCTAGAATGGAGAACATGAAAATGTGA	978	44.48	MSFKSILQDMKGDFGSISRKGFGLRSRSQRVVEDRSMVVVDALKQSCWANMPPELLRDVLMRIEASECTWPPRKNVVCCAGVCRNWREIMKDLVKIPEFSGKLTFPISLKQPGPRGSLIQCFIKRNRSAQTYHLYLSLNQAANDDGKFLLAAKKCRRATCTDYIISLNAEDVSKGSSTYIGKLRSNILGTKFTVYDAQPPHGGALTTKCRSLRPGSMKRVSPRVPAGNYPVSNISYELNVLGSRGPRRMQCLMNAIPASAMDPGGVAPTQTEFLVSNVDTFSSLAFFRSKSARIDNSQSGALLTGQNDSMLTLKNKAPRMENMKM*	326

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Taer4g02434	325	PANTHER	TUBBY-RELATED	44	321	-	-
	Taer4g02434	325	Pfam	Tub family	109	321	IPR000007	-
	Taer4g02434	325	Pfam	F-box domain	48	93	IPR001810	GO:0005515(InterPro)
	Taer4g02434	325	SUPERFAMILY	F-box domain	42	92	IPR036047	GO:0005515(InterPro)
	Taer4g02434	325	CDD	F-box-AtTLP-like	48	92	-	-
	Taer4g02434	325	PRINTS	Tubby superfamily signature	313	325	IPR000007	-
	Taer4g02434	325	PRINTS	Tubby superfamily signature	163	179	IPR000007	-
	Taer4g02434	325	PRINTS	Tubby superfamily signature	179	203	IPR000007	-
	Taer4g02434	325	PRINTS	Tubby superfamily signature	228	255	IPR000007	-
	Taer4g02434	325	Gene3D	Tubby Protein; Chain A	108	325	IPR025659	-
	Taer4g02434	325	SUPERFAMILY	Tubby C-terminal domain-like	97	319	IPR025659	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Taer4g02434	K19600	tubby and related proteins

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Taer	Taer-Chr4:54685675	Taer8g00852	Taer-Chr8:11484345	dispersed
	Taer	Taer-Chr4:54685675	Taer1g04967	Taer-Chr1:46643893	transposed

Gene Family Members

Select	Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
	Taer1g01749	.	30	406	TUB Transcription Factor family	AT2G47900	65.517	0.0	535.0
	Taer1g02185	.	1	455	TUB Transcription Factor family	AT1G76900	63.715	0.0	559.0
	Taer1g04967	ACH	13	393	TUB Transcription Factor family	AT2G18280	62.657	6.66e-174	489.0
	Taer1g06146	.	1	445	TUB Transcription Factor family	AT1G25280	76.0	0.0	629.0
	Taer1g06417	ACH	1	393	TUB Transcription Factor family	AT2G18280	60.048	3.07e-174	490.0
	Taer2g03194	.	84	397	TUB Transcription Factor family	AT1G16070	61.146	5.78e-145	416.0
	Taer4g01376	.	16	413	TUB Transcription Factor family	AT1G47270	53.941	1.19e-145	420.0
	Taer4g02434	.	1	326	TUB Transcription Factor family	AT2G47900	71.865	1.15e-162	458.0
	Taer7g00076	.	1	379	TUB Transcription Factor family	AT1G53320	65.228	0.0	511.0
	Taer8g00852	.	1	445	TUB Transcription Factor family	AT1G25280	74.009	0.0	623.0
	Taer8g00871	.	238	291	TUB Transcription Factor family	AT1G16070	50.0	1.15e-09	53.1
	Taer8g00872	.	238	291	TUB Transcription Factor family	AT1G16070	50.0	1.15e-09	53.1

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	Taer	Tub	2.7e-58	CL0395		TF	TUB