AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Taer4g02480 ATGGGTGTCCCAAAACCCATCGGGTCTATGTCGGGTATTTACCCGTCGGGTTTCGGGTCTACCCATGGGTACTCGGGTCTACCCGTTTCTCACATAAAACTTACCTGTTTGACATATCCCAAGAAGCAAAAAGCAGAGCATATACCAAGAGTGTTGACTCAAGCAAAGAGAGGTCTAATGGCGAAAAACTTGGTCAAATACTCCATTGTGGATGCATTTACAGACACGGCGTTTAAAGGAAACCCGGCAGCCGTGTGTTGGTTAAAAGACATCGAGAAAGATGATAAGTGGTTACAATCAGTTGCAACTGAATTCAACATTTCTGAGACTTGTTACCTAACTCCCATTCTTCAACACGCTTCTCTAAACCCTAGCTTTCACCTCAGATGGTTCACTCCTGTTGCTGAGGTGGAGCTTTGTGGTCATGCAACTTTAGCAGCTGCCCACTTCCTTTTTCAGTCTGGCTTGGTGAATTCTAACATAATCGAATTTTCAACTCTTTCTGGAATTTTGACCGCCAAAAGAGTTCCAGCTAACGAGATCAATGGCTCATCAAATGGTGAATCACAAGACAACTTCTACATAGAGTTAGATTTCCCTGTTGTGCCTGTTTCAGATTACAATGATCTTGAGGTTTCTGCAATTTCAGAAATATTAAACGGTGTTTCAATTGTTGACGTAAAGAAGAACACACTTGATGATATCTATGTGGTGCTTCCATCAGTAGAAGAAGTGGTAGAATTTAAGCCTCAAATCAATAAGATTAAAGATGCACCAGGTAGAGGGATAGTGATCACAGCACGTGCACCTAATGGGTCAGGGTTTGACTTTTATAGTCGCTTCTTTTGCCCTAAATACGGAATCGATGAGGATCCTGTTTGTGGGAGTGCACATTGCGCCTTAGCGGCCTATTGGCATGAGAAGTTGGGGAAATGTGATTTCGTTGCGTATCAGGCATCACCTAGAAGTGGTGTATTACATGTCCACATAGATACAGAGAATCAAAGAGTACTTCTTCGAGGTAAGACCACTACGGTCATGGAAGGATTTCTTTTGGTCTAA 1062 42.66 MGVPKPIGSMSGIYPSGFGSTHGYSGLPVSHIKLTCLTYPKKQKAEHIPRVLTQAKRGLMAKNLVKYSIVDAFTDTAFKGNPAAVCWLKDIEKDDKWLQSVATEFNISETCYLTPILQHASLNPSFHLRWFTPVAEVELCGHATLAAAHFLFQSGLVNSNIIEFSTLSGILTAKRVPANEINGSSNGESQDNFYIELDFPVVPVSDYNDLEVSAISEILNGVSIVDVKKNTLDDIYVVLPSVEEVVEFKPQINKIKDAPGRGIVITARAPNGSGFDFYSRFFCPKYGIDEDPVCGSAHCALAAYWHEKLGKCDFVAYQASPRSGVLHVHIDTENQRVLLRGKTTTVMEGFLLV* 354
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Taer4g02480 353 PANTHER PHENAZINE BIOSYNTHESIS PROTEIN 65 353 IPR003719 GO:0003824(InterPro)|GO:0005737(PANTHER)|GO:0009058(InterPro)|GO:0016853(PANTHER)
Taer4g02480 353 SUPERFAMILY Diaminopimelate epimerase-like 66 352 - -
Taer4g02480 353 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 201 341 - -
Taer4g02480 353 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 69 349 - -
Taer4g02480 353 Pfam Phenazine biosynthesis-like protein 70 349 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Taer4g02480 353 NCBIfam PhzF family phenazine biosynthesis isomerase 68 351 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Taer4g02480 K06998 trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Taer Taer-Chr1:52316270 Taer4g02480 Taer-Chr4:55274664 dispersed
Taer Taer-Chr2:4688349 Taer4g02480 Taer-Chr4:55274664 dispersed
Taer Taer-Chr4:55274664 Taer4g02481 Taer-Chr4:55284254 tandem