AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Taer4g02490 ATGCTCAATCTTTTCAACAAAAATCTCCGGCGACTCTGCTCAAAGCTCCGGTGGCCGTTACGCCGCCGTGCAAAGCCAAAAGTGATCATCAAACGATTTGGAAAATCAAAGTCAAGAAATGATCAAGATTTAATAAACACAAATGGGTCAGCCACAATTCATCCAAATAGCCATTTGGGTATCCAAAAACCACAAAACCCAGTTCGAATTGCAACTTTTAATGCTGCTTTATTCTCCATGGCACCAGCAGTTCCAGAGTTGACTAAAAAAGCTTCAACCTTTGACCATGGTGGTGAAGATGATGAAAATTGCAGTAAAGTAAATTTCAATTCATCAGGTTATTATAACAATTCAAGATCAAAATCAATGGTGGATAGACCCAAAAGTATATTGAAACAATCACCATTACATTCAAGCTCAATAAGCAGTTCAGAATTGTTGTCAAAACAGAAGAAATTTGCAAAGTCAAAGCTGAGAGTGTCAATAAACTTACCTGATAATGAGATATCATTGAAAAGAAGTGGGCAGTTGAGCTTTGTTGCAGATGAAATTGAACCCGACCCGAGTTCGAAAACAAATGGTTCTAAGGGTATTAGCAGGATCTTGAAAGGAAAAGGTGTTTTGAGATCACAAAGTAGTGTTTTTTCAAGAGAATTTGAAAGTCAAAGGGGGAGTTTTAGGTCAACCAAGACTGTTCTTGAGGTTTTGAAAGAATTGGATGCTGATATATTGGCTTTACAAGATGTGAAAGCTGAAGAAGAAAAAGATATGAAACCATTGTCTGATTTGGCTGCTGGTTTGGGTATGAATTATGTTTTTGCTGAAAGTTGGGCACCCGAATATGGTAACGCGATCTTGTCCAAATGGCCGATTAAACGATCCAAGGTTCAGAAAGTTTTCGATGATTCCGATTTCAGGAATGTATTAAAGGCGACAATCGATGTTCCACAAACCGGAGAAGTTGATTTTCATTGCACCCTTCTTGATCATCTTGATGAAAATTGGCGAATGAAGCAAATAACTGCAATAATCGAATCTAATGACAGACCACACATCTTAGCTGGCGGTATCAACTCTCTTGATGAAACTGATTACTCGCCTGAAAGATGGACCGACATTATTAAGTACTATGAAGAAATGGGCAAACCAACACCAAAAGTCGAAGTGATGAAGTACTTAAAGAGCAAACAGTACACTGATGCTAAGGATTTTGCAGGCGAATGTGAATCGGTTGTCATTATCGCTAAAGGCCAAAGTGTGCAAGGTACATGTAAATATGGTACTCGGGTAGATTATATTTTAGTGTCGCCTGAATCACCCTACAAGTTTGTTCCTGGTTCATATATGGTTTTATCATCAAAAGGTACCTCTGACCATCACATAGTCAAAGTTGATGTAACAAAGGTAGACGAATCGAGTCAACAACAATACGTTAGAAGACATCGCCATCCTAAACAAAAAGTTGTGAAGATAATGAATTCTAATTCATCAAAAGGGGCATGGAAAATGCAAACTTTTGATAGATAG 1527 38.05 MLNLFNKNLRRLCSKLRWPLRRRAKPKVIIKRFGKSKSRNDQDLINTNGSATIHPNSHLGIQKPQNPVRIATFNAALFSMAPAVPELTKKASTFDHGGEDDENCSKVNFNSSGYYNNSRSKSMVDRPKSILKQSPLHSSSISSSELLSKQKKFAKSKLRVSINLPDNEISLKRSGQLSFVADEIEPDPSSKTNGSKGISRILKGKGVLRSQSSVFSREFESQRGSFRSTKTVLEVLKELDADILALQDVKAEEEKDMKPLSDLAAGLGMNYVFAESWAPEYGNAILSKWPIKRSKVQKVFDDSDFRNVLKATIDVPQTGEVDFHCTLLDHLDENWRMKQITAIIESNDRPHILAGGINSLDETDYSPERWTDIIKYYEEMGKPTPKVEVMKYLKSKQYTDAKDFAGECESVVIIAKGQSVQGTCKYGTRVDYILVSPESPYKFVPGSYMVLSSKGTSDHHIVKVDVTKVDESSQQQYVRRHRHPKQKVVKIMNSNSSKGAWKMQTFDR* 509
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Taer4g02490 508 MobiDBLite consensus disorder prediction 40 63 - -
Taer4g02490 508 MobiDBLite consensus disorder prediction 92 126 - -
Taer4g02490 508 MobiDBLite consensus disorder prediction 104 124 - -
Taer4g02490 508 PANTHER CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR 13 465 IPR051916 GO:0005783(PANTHER)|GO:0006506(PANTHER)
Taer4g02490 508 Pfam Endonuclease-Exonuclease-phosphatase family 227 459 IPR005135 GO:0003824(InterPro)
Taer4g02490 508 MobiDBLite consensus disorder prediction 39 63 - -
Taer4g02490 508 FunFam Endonuclease-exonuclease-phosphatase family protein 217 469 - -
Taer4g02490 508 Coils Coil 236 256 - -
Taer4g02490 508 Gene3D Endonuclease-exonuclease-phosphatase 216 469 IPR036691 -
Taer4g02490 508 SUPERFAMILY DNase I-like 229 466 IPR036691 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Taer4g02490 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Taer Taer-Chr4:5656971 Taer4g02490 Taer-Chr4:55398458 wgd