AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Taer4g02506 ATGGCTGTTTATCTGGCACGTGTCTTTGTTCCACAATCATCTCTTCAATTCACCAAATCCTCTTCCATTTTTATCAACATAAACCCTCCGCCACCAACCTCCACCACAACTCGATTCTCCGTTCTAGCAATGTCGGAATCTAACCGCACCACCGTCCTCGTCACCGGCGCCGGCGGCAGAACAGGTCAAATAGTTTATAAGAAGCTGAAGGAGAGATCTGGTGAGTATATAGCACGAGGACTGGTTAGAAGTGAGGAGAGCAAGGCGAAGATCGGTGGAGCTGACGACGTTTTGATTGGAGATATAAGGAACGTAGAAACTGTTGTTCCGGCTGTTGAAGGTGTTGGTGCTCTTGTGATTCTTACCAGTGCAGTTCCTAAAATGAAACCTGGTTTTGATCCGACGAAAGGCGGAAGACCTGAGTTTTATTTTGAAGAAGGATCATATCCTGAACAGGTTGATTGGGAAGGGCAAAAGAATCAAATTGATGCAGCTAAAGCTGCTGGCGTGAAGCAAATTGTTCTGGTTGGGTCCATGGGCGGAACAGATCTTAACCACCCTTTAAACAGCCTAGGAAACGGGAATATACTGGTCTGGAAGAGAAAGGCTGAACAGTATCTAGCAGACTCTGGGATTCCATACACGATTATAAGGGCTGGAGGTTTGCAGGACAAGGAAGGTGGTATACGGGAACTGCTTGTCGGAAAAGATGACGAGCTTCTTAAAACTGAAACTAGAACCATTGCCAGAGCAGATGTTGCTGAAGTTTGTATTCAGGCGTTGCAATTTGAGGAGGCGAAATTCAAAGCATTTGATCTTGCATCCAAACCTGAGGGAAGTGGAACGCCAACGAAAGACTTCAAGAGCTTATTTGCCCAGATCACGACTCGGTTTTAA 897 45.93 MAVYLARVFVPQSSLQFTKSSSIFININPPPPTSTTTRFSVLAMSESNRTTVLVTGAGGRTGQIVYKKLKERSGEYIARGLVRSEESKAKIGGADDVLIGDIRNVETVVPAVEGVGALVILTSAVPKMKPGFDPTKGGRPEFYFEEGSYPEQVDWEGQKNQIDAAKAAGVKQIVLVGSMGGTDLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGIRELLVGKDDELLKTETRTIARADVAEVCIQALQFEEAKFKAFDLASKPEGSGTPTKDFKSLFAQITTRF* 299
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Taer4g02506 298 Pfam NAD(P)H-binding 56 262 IPR016040 -
Taer4g02506 298 FunFam Uncharacterized protein At5g02240 48 298 - -
Taer4g02506 298 CDD SDR-a5 51 273 - -
Taer4g02506 298 Gene3D - 47 298 - -
Taer4g02506 298 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 50 276 IPR036291 -
Taer4g02506 298 PANTHER NITROGEN METABOLIC REGULATION PROTEIN NMR-RELATED 45 298 IPR044163 GO:0009507(PANTHER)|GO:0016491(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Taer4g02506 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Taer Taer-Chr1:51442201 Taer4g02506 Taer-Chr4:55656265 dispersed
Taer Taer-Chr4:55656265 Taer9g02909 Taer-Chr9:29573845 dispersed