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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Taer4g02527 ATGCCATCCACCATCGAACGCAACCTCAACCTCTGCTTCACCAAACTCAAACGCCACCACTCTCCACCACCCCCACCACCTCCCTCCACCCACCACCGTCACCACCACCGCCGTTGCCACTCCGACACCATCAAAACCTTCAACACCCTCTACAACCACCCCACCTCCGACTCCGACGACACCTCCTCCCCCAACATCTCCACCCTCATCTCCTCCGACCGCTTCTTCTTCTCCTCCCCCGGCCGCTCAAACTCAATAATCGAATCATCATCCCACTCCACCTCCTCCGTCGCTTCCTCATCCTTCACCCCTGAACACATCACACGTGTCTTCAGGGGTGAAGGTGAAGAAGATGGGTTTGAAACAAAGTACGGGTCCGGCGGCGGCGGTGTTGCAATTCCAACGATCTCGCCGGACCCGTACTTCGATTTCAGAAAATCGATGCAGGAGATGGTGGAGGCACGTGACCTCATTGATGTGCGTGCTAACTGGGATTATTTGCACGAGCTTCTCACGTGCTACCTGGATTTGAATCCTAAAAGTGCTCATAAGTTTATTGTTGGAGCTTTTGCTGATCTTTTGGTTACTCTCATGGCGGAGAGTGGTGGTGGTCGCCGGAATATTTGA 627 54.07 MPSTIERNLNLCFTKLKRHHSPPPPPPPSTHHRHHHRRCHSDTIKTFNTLYNHPTSDSDDTSSPNISTLISSDRFFFSSPGRSNSIIESSSHSTSSVASSSFTPEHITRVFRGEGEEDGFETKYGSGGGGVAIPTISPDPYFDFRKSMQEMVEARDLIDVRANWDYLHELLTCYLDLNPKSAHKFIVGAFADLLVTLMAESGGGRRNI* 209
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Taer4g02527 208 MobiDBLite consensus disorder prediction 16 39 - -
Taer4g02527 208 ProSiteProfiles OVATE domain profile. 133 196 IPR006458 -
Taer4g02527 208 Pfam Transcriptional repressor, ovate 137 197 IPR006458 -
Taer4g02527 208 NCBIfam uncharacterized plant-specific domain TIGR01568 134 198 IPR006458 -
Taer4g02527 208 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 30 199 IPR038933 GO:0045892(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Taer4g02527 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Taer Taer-Chr4:55945253 Taer10g00648 Taer-Chr10:4789130 transposed
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Taer Ovate 3.8e-24 No_clan TF OFP