AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Taer4g02546 ATGGCTTCGATGTCAAAGGCGGACTCTAGACGTATGTACTCGTGGTGGTGGAACAGTCACATCAGCCCTAAGAACTCTAAATGGCTTCAAGAGAATCTTACAGATGTGGATATCAAAGTGAAAGCAATGATAAAGCTCATTGAAGAAGATGCTGATTCATTTGCTAGAAGGGCAGAAATGTACTACAAAAAGCGACCCGAGCTTATGAAGCTGGTTGAAGAGTTATACAGGGCATATCGAGCCTTAGCCGAAAGATATGATCACGCAACCGGGGCCCTCCGCCAGGCCCACAAAACAATGACCGAAGTCTTCCCAAATCAAGTCCCCGCAGGGTGTGATGACTCAGCACCTAATTCTCCCTTTGATACTGATCCTCAGACCCCAGATTCAAGAACCACAACTCCATGTTTTGATACTGATGATTTGCATAAAGATGGGTCAACAGGAACAGCAAGAAAAGCCCTCAATTTCAGCGATTCAGAAGATGTTAACAGTAATAAAAATGGGACCCACGATCGTAACCTGTCTCGGTTTGAGAGTGTAGATGTGAATGATAATGAGATCATGTTATTAAAAGAAGCCCTGGCAAAATTAGAAGATGAAAAAGAAGCTGGATTAAAGCAGTACCTCGAGAGTTTGGATAAATTATCCAAACTCGAGTCCGAGATCTTAAAATCACAAGAAGAATCTAAAGAACTCACTGACCGTGCAAGTAAAGCCGAAGCTGAGTCGCAAGAATTGAAAGACATGCTACAAAAATTAGAAGCTGAAAAAGAGGAAAGTCTTGACCTTTACCATCAAGCCCAAAAGAAAATTGAGGAAATTAATGAGCAAAATTTGAAGGAAGAAATCAGTAGATTAAAGGATGAAAGAGATGCTGCTTATGATCAATATAAACAATCTTTGAATCTGATATCAGATTTGGAGAAGAAGTTACTAGAAGCAGAAAAGGAAATTGAAACATTGAAGCTAGCAATTGCTAAATTAACCGAAGAGAAAGAAGCACAAACTATATTATACCAGAAATGCATGGAGACTATTGCGAGTCTTGAACTTAGACTCGTTTGTGCACAAGAAGAAACCGAAAGACTGAAAACCGAAATTGATAATGGAGTTTTACTTTTAAAGGGTGCAGAAGAACAACGATTAATGCTAGAAAAGTCAAACACGAGTCTTCACATGGAATTGGAGTCAATGGGGGTCAAAATCGAAAGTCAAAATCAAGAAATTACTGAGAAACAGAAGGAATTGGGGAGGTTATGGACTTGTATACAAGAAGAGCGGATACGGTTTGTGGAGGCTGAAACTGCTTTCCAAACTTTGCAGCAATTACACGCTCAATCTCAGGAGGAATTAAGATCAATGGCTGGAGAGTTACAAAACAGGGCCCAGATCTTGCGGGAAATTGAAACTCGTAATGAAGTTTTAGAAGGAGAGATACAGAAGCAACTTGAGGAGAACAAGAGTCTTAATGTGCTCAACTTATCTTCTAGCATTTCATTAAAAGAAATGCAGACGGAGATCAGTAGCTTAAAAGAAGTAAACGGGAAGCTCGCTGAAGAGGTTGACCTTCGTGTTGACCAAAGAAATGCTCTTCAGCAAGAAATATACTGTTTAAAAGAGGAACTAAATGATATGAACAAGAAGCACGGGTCGATTTTGGAGCAAGTTGCTTACATCGGATTGAACCCGGAAAGCTTCGGGTCATCTGTAAAGGAGTTGCAAGATGAAAACTCCAATTTGAAAAAAGCATGGCAAACAGAAAAGGCTGCTAAAGAAGCTTTACTGGAGAAATTGGAAATTATGGGTCAACTTCTTGAGAGAAATGTTGTTTTGGAGAATTCGTTATCGGATTTGGGTGCTGAATTAGAAGGGGTTCGGGGTAAATTGAAGTCACTTGAAGATTCTTATCAATCTCTTTCAGAAGAAAAGTCTAACATTGCTGTTGAAAAGGCGAATTTATTAGGTCAGTTACAAGTAACAACTGATAACTTGAGTCAAGTTTCGGAGAAAAACACTGTTCTTGAGAATTCCCTTTTTGATGCACATGTGAAACTTGAAATCTTGAAGCAAAAATCAAAGAGTTTTGAAGATTCATGTCAATTGCTTGCTGATGAAAAGTCGGCACTTATCAGTGAAAAAGGTACTCTACTCTCGCAGATGGAAATTACTGAAAGAACCTTACAGGATCTGAAGATGAAATACACAGATTTAGAAGAGAAATATTCCATAATGGAGAAAGAAAGAGAATCTACACTTCAACAAGTGGAAGAGTTGAATGTGTCATTGGCTTTACAAAATCAAGAACATGTTACTTTTGCCCAAAAGAATAGCAAACAGTTGCAGGCAATGAGAAGTCAAATTCAACTCCTGCAAGAAGAAAATCAAAATAAAAGCAAAGAATTTGGAGAAGAATTAGATAGATCTTTCGGTTCTGAAATGAAAATCTTCATCTTGTTGAAATGTGTAAAAGATCTTGAAGAAAATAGCCTCTCTCTGTTCAATGATTGCCATAAACTCCAAGAAGCATTAAAATTTTCTGAAAGTCTTATTCATGTGTTGAAGCAAGAGAAAACTGAAAACCAGATAAAGATTAAATCTTTATCTGATCAAAACAACAGATTGAAGAACGGGGTGCATCAGTTGTTGAAATTTGCTGGTCTTTCTTTACACCTGGGGTCCGAAAACGGGCAGGAACAAACTTGTTTCGATAGTCTACAGAAAACATTTGAAGGTACAAACTATGCCCTAATTCAAAACGAAGAAAAGAACATGAAGTTGGTTGTTGAGGTATCTATTCTAGTCACACTTTTGAGGCAGTTAAAAACAGAACTGGTGAATCTTGAGACCGAAAAGGGTGTTATTCAACAGGATCTGTGTGTTCAGGCTGACAAGATTCTCGAGTTGCAAAACGAGGCCCGGAAAATTTCAGAGGTGAATGAAGGGTTAAGATGTAAAGTGATTGAAGGTGAGAGTAATGAATCAGGGCTAAGAACTCAGCTAGAGAATATACAGTGTGAGTTGTCGACCATTCAAGAAGCTTTCAGAACATTAAAGATGGAGAATTCAGTGGTTCTTGAAGAAAAGGAATCTTTGTTGAAAGATAACTTTCATGTCAAGAACAAGATCAAGGCTTCAGAAGAGGTAAATGAAATCATATTGACAGATGTTTTAAGTCAAAGTATTTTCTCTCAAACTTTGAAGACTTACATTGATGAGAAACATGAAGAAATGTCTATGGTTGAGAAGAAATTGGAAGAGGTGGGAAAGGAAAACATTGATCTTAAAAACACTTTGGAAAAATCCGAACATGAACTGAAAACAGTCATATCTGTTCGCGATCAGTTGAATTTGGATTTAGTGAACATAAGTAATTTGCTGCAAGTAAAAGAAAAGGAACATCAGGGAGCGGTCCAACATATAACGATTTTAGAGAATGACAAAAAGGAGTTGTCTGAGATTTTAGCTGATTTACAGAGAGAAAACAATGAGACCAAACTGACGAATGATAAACACGGGAAACGAATTCTCCAACTTTTACAAGATAATGATCATTTGAGTAAAGAAAACCAGATTTTGGAGGTTAAAGTACAACATTTGACGGAAAATTTGGAGAAAACAGAGGAAACGGCTCAATTTTTGGAAACAGAAGGATCATTAGTTTATGGTGATTTGCAAACTTCCAACATTTATCAAGTTTTATTGGAAGAAAAGATCCATGAACTTACTGAAGCTTGTTTGAGTCTTCAAGAAGATAATAACTCCAAAAATGTGAATAATGAACTGCTTCAAGAAAAAAACAACATTTTGGAATATGAGAATGGAGATCTTAAAGCTCGTTTGGCTGCTTATGGTCCGGCACTTGAATCTTTGAAGGACAGCATCATATCGTTGGAAGATCATGTATGTATCAGAACCAAAGTCCCAGAATCTGATAACGAGGATGCAAAGGGTGGTGAATCTGAAACCATGGAGCGAGATGCGTTTATTGAGTTGCAAGATCTTCAAAGTAAGGTTAAAGTTATTGAAATGGCAGTGGTCGAAATGCAAATGCGGTCAGTGCAACAGAAGTTAGATTCAGATGCAAAGCTGGAATCCACAATGAGGCAGATTGAAGAACTGAGTTCTCAAAAGCATCCTCGAAAACCAAACGGACAACAAAAATCAAGATCAGAAATCTCAGAAGCAGACCCGAAAGACATCATGCTGGATGAAGCGTCTGAATGTTCATCATATGGTGTAAGCAAAAGACGAACAACCGAAGGCGAGATTTGGGAAACCACGAATGATTTTAAAACCATGTACAAACACAATCCAACTGCTTCAGACGCGTCCCTCGATAACATAATGGAGAAGCTAGAAGTTTCTAGAAGATTCAAGGAGCCTCGTGATGACGAAAACAAGAGGAAGGTTCTAGAACGACTGAATTCCGATGTTCTAAAACTAACCAATCTTCAAATTACAATTGAGGATTTGAAACGGAAAGTCGAGATCACGTTACGGAGCAGACGGGGAAAAGGAATGATCGAATGCGAGACGCTAAAAGGCCAACTCATGGAAGCTGAATCTGCTATCCAGAAACTATACGAGCTGAACGGGAAATTTGTAAAACAAATAGAAGGTATCGACGAAGATGGAGAAACTGAAAGTATGAGAAGAAGAAAGGTGTCGGAACAAGCGAGACGGGTATCGGAAAAGATCGGTCGGTTGCAGTTAGAAATACAAAAGATACAGTTTGTGTTGTTGAAACTCGATGAAAACGAAGCAGCAGGAAAGATGCGGTATCTGGACAGCAATAAACGGGTTCTTTTGAAGGATTATCTTTACGGTGGCGGAAGAACAAAGGCAACAGTTAGCAGCAGCAGGCGGAAGAAAGGCCATTTCTGCGCGTGTGTCGAGCCTTCAACCAAAGGCGATTGA 4920 38.6 MASMSKADSRRMYSWWWNSHISPKNSKWLQENLTDVDIKVKAMIKLIEEDADSFARRAEMYYKKRPELMKLVEELYRAYRALAERYDHATGALRQAHKTMTEVFPNQVPAGCDDSAPNSPFDTDPQTPDSRTTTPCFDTDDLHKDGSTGTARKALNFSDSEDVNSNKNGTHDRNLSRFESVDVNDNEIMLLKEALAKLEDEKEAGLKQYLESLDKLSKLESEILKSQEESKELTDRASKAEAESQELKDMLQKLEAEKEESLDLYHQAQKKIEEINEQNLKEEISRLKDERDAAYDQYKQSLNLISDLEKKLLEAEKEIETLKLAIAKLTEEKEAQTILYQKCMETIASLELRLVCAQEETERLKTEIDNGVLLLKGAEEQRLMLEKSNTSLHMELESMGVKIESQNQEITEKQKELGRLWTCIQEERIRFVEAETAFQTLQQLHAQSQEELRSMAGELQNRAQILREIETRNEVLEGEIQKQLEENKSLNVLNLSSSISLKEMQTEISSLKEVNGKLAEEVDLRVDQRNALQQEIYCLKEELNDMNKKHGSILEQVAYIGLNPESFGSSVKELQDENSNLKKAWQTEKAAKEALLEKLEIMGQLLERNVVLENSLSDLGAELEGVRGKLKSLEDSYQSLSEEKSNIAVEKANLLGQLQVTTDNLSQVSEKNTVLENSLFDAHVKLEILKQKSKSFEDSCQLLADEKSALISEKGTLLSQMEITERTLQDLKMKYTDLEEKYSIMEKERESTLQQVEELNVSLALQNQEHVTFAQKNSKQLQAMRSQIQLLQEENQNKSKEFGEELDRSFGSEMKIFILLKCVKDLEENSLSLFNDCHKLQEALKFSESLIHVLKQEKTENQIKIKSLSDQNNRLKNGVHQLLKFAGLSLHLGSENGQEQTCFDSLQKTFEGTNYALIQNEEKNMKLVVEVSILVTLLRQLKTELVNLETEKGVIQQDLCVQADKILELQNEARKISEVNEGLRCKVIEGESNESGLRTQLENIQCELSTIQEAFRTLKMENSVVLEEKESLLKDNFHVKNKIKASEEVNEIILTDVLSQSIFSQTLKTYIDEKHEEMSMVEKKLEEVGKENIDLKNTLEKSEHELKTVISVRDQLNLDLVNISNLLQVKEKEHQGAVQHITILENDKKELSEILADLQRENNETKLTNDKHGKRILQLLQDNDHLSKENQILEVKVQHLTENLEKTEETAQFLETEGSLVYGDLQTSNIYQVLLEEKIHELTEACLSLQEDNNSKNVNNELLQEKNNILEYENGDLKARLAAYGPALESLKDSIISLEDHVCIRTKVPESDNEDAKGGESETMERDAFIELQDLQSKVKVIEMAVVEMQMRSVQQKLDSDAKLESTMRQIEELSSQKHPRKPNGQQKSRSEISEADPKDIMLDEASECSSYGVSKRRTTEGEIWETTNDFKTMYKHNPTASDASLDNIMEKLEVSRRFKEPRDDENKRKVLERLNSDVLKLTNLQITIEDLKRKVEITLRSRRGKGMIECETLKGQLMEAESAIQKLYELNGKFVKQIEGIDEDGETESMRRRKVSEQARRVSEKIGRLQLEIQKIQFVLLKLDENEAAGKMRYLDSNKRVLLKDYLYGGGRTKATVSSSRRKKGHFCACVEPSTKGD* 1640
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Taer4g02546 1639 Coils Coil 396 416 - -
Taer4g02546 1639 Coils Coil 216 367 - -
Taer4g02546 1639 Coils Coil 529 549 - -
Taer4g02546 1639 Coils Coil 1482 1502 - -
Taer4g02546 1639 Pfam KIP1-like protein 14 87 IPR011684 GO:0003779(InterPro)
Taer4g02546 1639 PANTHER PROTEIN NETWORKED 4A 278 973 IPR051861 -
Taer4g02546 1639 MobiDBLite consensus disorder prediction 1371 1419 - -
Taer4g02546 1639 Coils Coil 721 755 - -
Taer4g02546 1639 Coils Coil 1511 1531 - -
Taer4g02546 1639 Coils Coil 966 986 - -
Taer4g02546 1639 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 13 93 IPR011684 GO:0003779(InterPro)
Taer4g02546 1639 Coils Coil 1141 1217 - -
Taer4g02546 1639 Coils Coil 616 650 - -
Taer4g02546 1639 Coils Coil 501 521 - -
Taer4g02546 1639 Coils Coil 181 208 - -
Taer4g02546 1639 Coils Coil 1071 1105 - -
Taer4g02546 1639 Coils Coil 1332 1352 - -
Taer4g02546 1639 MobiDBLite consensus disorder prediction 105 173 - -
Taer4g02546 1639 Coils Coil 1260 1280 - -
Taer4g02546 1639 Coils Coil 1113 1133 - -
Taer4g02546 1639 Coils Coil 774 801 - -
Taer4g02546 1639 Coils Coil 1001 1021 - -
Taer4g02546 1639 MobiDBLite consensus disorder prediction 226 247 - -
Taer4g02546 1639 MobiDBLite consensus disorder prediction 1371 1404 - -
Taer4g02546 1639 Coils Coil 931 958 - -
Taer4g02546 1639 Coils Coil 582 602 - -
Taer4g02546 1639 Coils Coil 466 493 - -
Taer4g02546 1639 MobiDBLite consensus disorder prediction 119 135 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Taer4g02546 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Taer Taer-Chr4:56166885 Taer4g02826 Taer-Chr4:59715670 dispersed
Taer Taer-Chr1:28110842 Taer4g02546 Taer-Chr4:56166885 transposed
Taer Taer-Chr1:47941798 Taer4g02546 Taer-Chr4:56166885 transposed
Taer Taer-Chr2:90403789 Taer4g02546 Taer-Chr4:56166885 transposed
Taer Taer-Chr4:59401533 Taer4g02546 Taer-Chr4:56166885 transposed
Taer Taer-Chr7:11018093 Taer4g02546 Taer-Chr4:56166885 transposed
Taer Taer-Chr4:5508196 Taer4g02546 Taer-Chr4:56166885 wgd