AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Taer4g02589 ATGGCGATAATGCACCAAATTTCTCTCACAAACAACCTTCAATGGAACCACCATAGTACACCTCAATTCAACACCTTCAAACCTACATCATCATCATTAAACAAAAAGTTCAACACCAAATTATCACTCAATACCAATAGAAGCAAAGTTAACTCATCGTTTGATTACAACCATACTGTTCAAACCAGCAACGATCATTACGAGTACGAAAAAGGTTTAATCGGAAACGGTCAACAATACCCTAGGCCGTCGGAGATTCAATGGAAGAAGGAATTGTGTAACGCCGTTCAGCTTATCGGAACTGTTGGTACATCGGTTGAGTTTAAGCAGCTTAGCTCCGGGAAGGTGCTTGCTTGGTGTCGACTTGCTGTTAAAAAATCTGCAACTGATACTACTTGGATCAATTTGACGTTTTGGGATGAGATGGCACATATTGCTTCTCAGCATGTGGAAAAGGGACAACAAATATATGTATCAGGTCGTCTTGTTTCAGATACAGTCGATAGTGATGATGGAAAGCAACAAACATACTATAAGGTGGTTGTTCAACAGCTAAAATTTATTGAGAGAAGCCCACCTTCAGCAGCTTCTAATGATGGAGACTTCAACTACAATTACAATTCCAACTCAAGCTCTATGACAACAGGTAAAAAGCAAAAGAATTATGCAGCAAATGGTACAGGATCTGTAGAAGAACTATGGCAAGCGTTTTTTGCTAATCCCGTTGATTGGTGGGATAATAGGAAGAACAAGAGAAGCCCGAATTACCCAGATTTCAAGCACAAAGACACGGGTGAAGCTTTATGGGTTGAAGGGAGATTGAATCCATCGTGGGTTAAATCTCAGTTATCGGTATTAGATTCACGGATGGAATCTTATCATGATCAAACTGATAATATGCGGTTTGGAGACAAGTTGACACCTTATTAA 930 39.68 MAIMHQISLTNNLQWNHHSTPQFNTFKPTSSSLNKKFNTKLSLNTNRSKVNSSFDYNHTVQTSNDHYEYEKGLIGNGQQYPRPSEIQWKKELCNAVQLIGTVGTSVEFKQLSSGKVLAWCRLAVKKSATDTTWINLTFWDEMAHIASQHVEKGQQIYVSGRLVSDTVDSDDGKQQTYYKVVVQQLKFIERSPPSAASNDGDFNYNYNSNSSSMTTGKKQKNYAANGTGSVEELWQAFFANPVDWWDNRKNKRSPNYPDFKHKDTGEALWVEGRLNPSWVKSQLSVLDSRMESYHDQTDNMRFGDKLTPY* 310
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Taer4g02589 309 Pfam Single-strand binding protein family 94 187 IPR000424 GO:0003697(InterPro)
Taer4g02589 309 CDD SSB-OBF 96 188 IPR000424 GO:0003697(InterPro)
Taer4g02589 309 NCBIfam single-stranded DNA-binding protein 93 225 IPR011344 GO:0003697(InterPro)|GO:0006260(InterPro)
Taer4g02589 309 ProSiteProfiles Single-strand binding (SSB) domain profile. 92 189 IPR000424 GO:0003697(InterPro)
Taer4g02589 309 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN 39 295 IPR011344 GO:0003697(InterPro)|GO:0003697(PANTHER)|GO:0006260(InterPro)|GO:0006264(PANTHER)|GO:0009295(PANTHER)|GO:0042645(PANTHER)|GO:0051096(PANTHER)
Taer4g02589 309 Gene3D - 92 226 IPR012340 -
Taer4g02589 309 SUPERFAMILY Nucleic acid-binding proteins 94 284 IPR012340 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Taer4g02589 K03111 single-strand DNA-binding protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Taer Taer-Chr4:11788344 Taer4g02589 Taer-Chr4:56841511 dispersed