AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Taer4g02602 ATGGCTGCTGCTGCTGCTGCAAATGAATTTATGCATCATTTATCTGTGGCTTGTTGCGAATGGTTCTTGATGTTTCTGATGTATCTTGATGCTGCATTGGGTTTTATTCTCACCAAATTTGCTCATCAATGTGAGTTGCAAACCCCTTGCTTGTTTTGCTTCCGGTTCGATCGTGTTTTTGGTGATGGACCGGATTATTATTTTAGTCATTTTTGTAATGATCATCGAACGGAGGTTGCTTGTTTGGTGTCTTGTAATCTTCATCGTAAGTTATGTGATGTTAGAGAAATGTGTGATGATTGTTTCATGTCAACAATGAAGAAAGATCAAGGGTATCCGAAACCTTTGTTAAATAAGAATCTTGTTCGTGCACCGTCGAGTACAGGGTTGTGTTCGTGTTGTAAGAGACAGTGGAAACCAAAACCAAGAAGTCAAATAAGGTTAGGTGTTCCTAAAGTACTTAGGCAACCTCCGTTGTTACCATTAATGACGGGCTGCTATCGTCGACGGAAAAATTTCAAAAAGGCCCGGGATAAGATTTCAGGAACCACGACTCCTTGCCATGTTGGCACTAAAATTCATGTGGATGTTGACATGGATGCGTTATCTGATTCGGGCTGTGCTGACCTTAAGTTTAGTTCGTGTTCGGGTTCGGAGTCTGGAGATTCGTTTTATGAGATTGAATGTGAAAATGAGGGTTTGGAGGATGATTATATCTCTCGTGTTATGATACATCAAGCAAAACGTTCCAATATTGTCTGTAATCTTGAGCCGTCACTTCGAAATGGGATCCATAAAGAGAGTATTACGAGTCCTCTATCTTTCACATCCGATGGTTCAATTGGGCAGGATTTAAAAGAAAATGGGCCTTTGGATGTTTGTAATGAAACAAGTCCATTGAATCAAGATTTGCATTCCGTTAGTGATCATAATGAGAGTATGTTGAGTCCTCTGTCTGCGACTTCCAATGGTTCAATGGGGCATGCTTTAAAGGAAAACGGGCCTCTAGAAGTTTTTAATGAAACAAGTTCATATAATCAAGATTTGCATTCCATTAATGATCATAACGAGAGTATGTTGAGTCCTCTATCTGCGACATCTAATGGTTCAATTGAGCATGATGTAAAAGAAAATGGGCCTCTAGAAGTTAGTAATGAAACAAGTTCATTTAATAAGGATTTGCATTCCAATAATGATCATAACGAGAGTATGTTGAGTCCTCTATCTGCGACATCTAATGATTCAGTCGAGCATGATGTAAAAGAAAATGGGCCTCTAGAAGTTACTAACGTCACAAGTCCATTTAATCAGGATTTACACTCCATTGATGACCATGAGTTGTCTAGTTCTTTAGATAAACATGAATGTTATGAATCTCCAAGCACCCACAATGTGGGCGAAATCAAGGGTGAAAGTGACATCGAAAAGCTAAAACGGCAGATGGAACATGATCAAGAACAATTGCGTTTATTGCACAAGGAATTAGACGAAGAAAGAAACGCTGCTGCAATAGCTGCTGACGAGGCAATGGCCATGATTACTAGATTGCAAGAAGAAAAATCTGCTTTACATATGGAAGCATTGCAGTATTTACGAATGATGGATGAACAAGCAGAATATGATATGGAAGCTTTAGATAAGGCTAATGATCTTGTCACTGAGAAAGATAAAGAAATTCAAGATTTAGAAGCCGAGCTGGAGTTTTTCAGAAGCCGATACGATGATGAATCGGCCATGGGGAATGCTATGGGAAATGGGAAAATGGATTCAGTATCTTCCTCTGGCTCAAAATCTATGAATACGTTAGAATCAAAGGCTCCGGTTTTAGACCTTGAAGATGAAAAGAAACACATTTTAAACTCTATATCAGAGTTGGAGATGAAATGTCACCAGTTTTCTAATGGTGATAACGGTTCGACACAACAAAATGAAACTGATAAGGGCACCCTTGAGAATGAAATTTCTGTTCTTAATGAATGGTTGGAAGCAATTGAATCTGATCGCGATTTTCTTGAGAACGCTTGTTTGATAGAAGATGCCAAACCGTTGATTAAAGTTACATTCTTCAACAAAGTCGAGGGGTGGACCTACTTGCTGGGTAGCCTGGGTGCGTATAAACCGTGA 2124 39.27 MAAAAAANEFMHHLSVACCEWFLMFLMYLDAALGFILTKFAHQCELQTPCLFCFRFDRVFGDGPDYYFSHFCNDHRTEVACLVSCNLHRKLCDVREMCDDCFMSTMKKDQGYPKPLLNKNLVRAPSSTGLCSCCKRQWKPKPRSQIRLGVPKVLRQPPLLPLMTGCYRRRKNFKKARDKISGTTTPCHVGTKIHVDVDMDALSDSGCADLKFSSCSGSESGDSFYEIECENEGLEDDYISRVMIHQAKRSNIVCNLEPSLRNGIHKESITSPLSFTSDGSIGQDLKENGPLDVCNETSPLNQDLHSVSDHNESMLSPLSATSNGSMGHALKENGPLEVFNETSSYNQDLHSINDHNESMLSPLSATSNGSIEHDVKENGPLEVSNETSSFNKDLHSNNDHNESMLSPLSATSNDSVEHDVKENGPLEVTNVTSPFNQDLHSIDDHELSSSLDKHECYESPSTHNVGEIKGESDIEKLKRQMEHDQEQLRLLHKELDEERNAAAIAADEAMAMITRLQEEKSALHMEALQYLRMMDEQAEYDMEALDKANDLVTEKDKEIQDLEAELEFFRSRYDDESAMGNAMGNGKMDSVSSSGSKSMNTLESKAPVLDLEDEKKHILNSISELEMKCHQFSNGDNGSTQQNETDKGTLENEISVLNEWLEAIESDRDFLENACLIEDAKPLIKVTFFNKVEGWTYLLGSLGAYKP* 708
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Taer4g02602 707 Pfam Zein-binding 476 566 IPR007656 -
Taer4g02602 707 ProSiteProfiles GTD-binding domain profile. 472 570 IPR007656 -
Taer4g02602 707 MobiDBLite consensus disorder prediction 271 331 - -
Taer4g02602 707 MobiDBLite consensus disorder prediction 294 328 - -
Taer4g02602 707 PANTHER MYOSIN-BINDING PROTEIN 2 6 675 IPR039306 GO:0017022(InterPro)
Taer4g02602 707 Coils Coil 608 628 - -
Taer4g02602 707 MobiDBLite consensus disorder prediction 400 414 - -
Taer4g02602 707 Coils Coil 545 579 - -
Taer4g02602 707 MobiDBLite consensus disorder prediction 580 599 - -
Taer4g02602 707 MobiDBLite consensus disorder prediction 348 419 - -
Taer4g02602 707 MobiDBLite consensus disorder prediction 348 373 - -
Taer4g02602 707 Coils Coil 474 501 - -
Taer4g02602 707 Coils Coil 506 526 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Taer4g02602 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Taer Taer-Chr2:101587014 Taer4g02602 Taer-Chr4:57025617 dispersed
Taer Taer-Chr4:9688403 Taer4g02602 Taer-Chr4:57025617 dispersed
Taer Taer-Chr4:57025617 Taer5g03225 Taer-Chr5:83920087 dispersed
Taer Taer-Chr11:2645068 Taer4g02602 Taer-Chr4:57025617 transposed
Taer Taer-Chr1:34361093 Taer4g02602 Taer-Chr4:57025617 wgd