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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Taer4g02603 ATGGGAACATTTGAAAAAGCTCAAAGTTGTAAGTACAATCCCTTACGCAATGCACAACCAACTCTATTTATACCACATTTTGCCAACCCATTCAATGCACAATCAATAATGGCAACAGGCTGCATAGGAAAGAGTTCATGGCCAGAGCTTGTAGGGGCAACAGGAGAAGCGGCCGCTACTAAGATTGAGAAAGAGAATCCTCGGGTCGATGCCATTGTGTTATTGGATGGAACCCCGACCACTAGGGACCTCAGATGCGACCGTGTGTGGGTGTGGGTGAACTCTAACGGGGTTGTGATTCGAACACCTATAATTCAGTGA 321 46.42 MGTFEKAQSCKYNPLRNAQPTLFIPHFANPFNAQSIMATGCIGKSSWPELVGATGEAAATKIEKENPRVDAIVLLDGTPTTRDLRCDRVWVWVNSNGVVIRTPIIQ* 107
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Taer4g02603 106 PRINTS Potato inhibitor I signature 83 93 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Taer4g02603 106 PRINTS Potato inhibitor I signature 71 82 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Taer4g02603 106 PRINTS Potato inhibitor I signature 46 59 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Taer4g02603 106 SUPERFAMILY CI-2 family of serine protease inhibitors 40 105 IPR036354 -
Taer4g02603 106 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 42 105 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Taer4g02603 106 ProSitePatterns Potato inhibitor I family signature. 47 58 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Taer4g02603 106 Gene3D Trypsin Inhibitor V, subunit A 31 105 - -
Taer4g02603 106 Pfam Potato inhibitor I family 44 105 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Taer4g02603 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Taer Taer-Chr4:57030692 Taer4g02609 Taer-Chr4:57117897 dispersed
Taer Taer-Chr4:57030692 Taer4g02604 Taer-Chr4:57058370 tandem