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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Taer4g02608 ATGTCTACCACATGTCAAGGAAAAGGTTCATGGCCCGAGCTTGTAGGTGCAAGGGGCGCAACTGCTGCTGCTAGGATTGAGAGAGAGAATCCACGGGTTGATGCGATTGTGGTTGTGGATGGAAGGGATTCGGTAACGACTGATTTTCGTTGCGACCGTGTGTGGGTTTGGGTGAATTTTAATGGGGTGGTTGTTCGAGCTCCTTTCATTGGCTAA 216 50.0 MSTTCQGKGSWPELVGARGATAAARIERENPRVDAIVVVDGRDSVTTDFRCDRVWVWVNFNGVVVRAPFIG* 72
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Taer4g02608 71 Pfam Potato inhibitor I family 8 71 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Taer4g02608 71 SUPERFAMILY CI-2 family of serine protease inhibitors 4 71 IPR036354 -
Taer4g02608 71 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 4 71 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Taer4g02608 71 Gene3D Trypsin Inhibitor V, subunit A 1 70 - -
Taer4g02608 71 ProSitePatterns Potato inhibitor I family signature. 11 22 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Taer4g02608 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Taer Taer-Chr4:57103786 Taer4g02608 Taer-Chr4:57109083 tandem
Taer Taer-Chr4:57109083 Taer4g02609 Taer-Chr4:57117897 tandem