AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Taer5g00698 ATGAAGTCACCGCTTGTGAAGTTAGGGCGAAAATTAGCGATGCAGAAGAGCGATGTGAAGGAGATGAGAGATCATCAGTCTTCTGCGCATTTAGATGAGCTTGCTCAGGCTTCGAAGGATATGCAAGAGATGAGAAACTGCTATGACGGTTTGTTATCTGCAGCTGCCGCAACCGCAAATAGTATATATGAATTTTCGGAGTCTCTAAATGAAATGGGGAACTGTTTGATGGGGAAAACCGCTGCGGCCGCTGATGCTGAAAGTGGAAACGCACTATCAACTTTGGGAAATTTGCAATTGGAACTTCAGAAAATTGCTGATATTTATCGTTCTCATGTAGTTGTGACAATTACTAACCCAGCAGACTCTCTTCTCAGTGAGCTACTAAAAGTGGAGGAGATGAAACTTCAGTGTGATGAGAAAAGAGAGGTATATGATCACATGATGGCTCAACATAGAGAGAAGGGAAAAGTAAAAAATGGTAAAGTTGAAAGTTCAGTTGCACAAAAACTGCAAGAAGCTCAAGATGAATATGATGAAGTGGCGAGACTATGTGTATTTCGGGTAAAATCACTTAAAGAAGGACAATGGCGCAGTCTTTTGACGCAAGCTGCTCGCCATCATGCTGCACAGTTGAATTTCTTTCGCAAAGGACTTAAAGCTGTAGAATCCGTTGAACCTTTCATAAGAAATGTTGCACAAAAGCATCGCATTGATTGCCAACTCAGTGGATTGTATGATTGCGGGTCCCAGGAAGGTGAGCCTATGAGTGGCTATGGAAGCGCTGATGATGGAGAATTGAGTTTTGATTATAAACAAAAGAAACATGGACTTGATGATGATGGAACCTCACCAAATCCAATGGAGCTGGACCAGGTAGATGTCCCATATTTTCAAGCTTCAAATGTAGAAGATTTAGAGACAAATCAGAATAAACATAAAAGAGAACAGCTTTTCGGTAAGCAAACTAGAGTTAGCAGCTATTCAGCCCCACTCTACCCTGACAAAAGTAATGCACCCCGAAAGCTTAAAGAAACCCAACCCACACCAAAATTTTACTCTTATGTACTACCTCCACCCAATGTAGACACCCGAAATCCAATTTCAAAGCCCACCATGTCTGTTTCTCATTCAACCCCGTTTCAAAATCCGCAACATGATACCACACCAACTCCTGCTTTGACCTCAAAAGTCCAGTCAACAGTTAAAGTCGGTAACATTGGTAAACCAACCATCCAGTTACCCACTCCATCAACTGGAAGATTTTCATTCTCACAACAAGATAATTATTACAGAAACGATGGTAGTAAAGCAGACAGACGACAATCTTACTCTGGTCCGTTACCACCAAGCAGGCAGTTTTCTTTTAAACTTGCATCTAATAATAGTGGGCCCATTACTTCTACTGAACTTCCTCACCCGCCTTCTCGGACCCCAGTTTCTCAGCCAAATAGCGCGTTATCTCCCTCGTTATCTTCTCCTAAAATAAGCGAGCTTCATGAGCTTCCTCGGCCTCCTTCTAGTCATTTATCTTTCTCTAAACCCGTTCCTATTTCTGGTGGCTTTAGTCGACATTCAGCACCCTTACTCTTAAAAAATCAAGAAATTTCTCCACCTAATAAACGTGCTATGCTAACATCAACTTGTTCACCTCTTCCACTTCCGCCTTCTGCTGTGAAAATCAACTCAAGTAACAGTGGGACCTGA 1707 42.06 MKSPLVKLGRKLAMQKSDVKEMRDHQSSAHLDELAQASKDMQEMRNCYDGLLSAAAATANSIYEFSESLNEMGNCLMGKTAAAADAESGNALSTLGNLQLELQKIADIYRSHVVVTITNPADSLLSELLKVEEMKLQCDEKREVYDHMMAQHREKGKVKNGKVESSVAQKLQEAQDEYDEVARLCVFRVKSLKEGQWRSLLTQAARHHAAQLNFFRKGLKAVESVEPFIRNVAQKHRIDCQLSGLYDCGSQEGEPMSGYGSADDGELSFDYKQKKHGLDDDGTSPNPMELDQVDVPYFQASNVEDLETNQNKHKREQLFGKQTRVSSYSAPLYPDKSNAPRKLKETQPTPKFYSYVLPPPNVDTRNPISKPTMSVSHSTPFQNPQHDTTPTPALTSKVQSTVKVGNIGKPTIQLPTPSTGRFSFSQQDNYYRNDGSKADRRQSYSGPLPPSRQFSFKLASNNSGPITSTELPHPPSRTPVSQPNSALSPSLSSPKISELHELPRPPSSHLSFSKPVPISGGFSRHSAPLLLKNQEISPPNKRAMLTSTCSPLPLPPSAVKINSSNSGT* 569
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Taer5g00698 568 CDD BAR 40 227 - -
Taer5g00698 568 MobiDBLite consensus disorder prediction 548 568 - -
Taer5g00698 568 Pfam BAR domain of APPL family 30 235 IPR004148 GO:0005515(InterPro)|GO:0005737(InterPro)
Taer5g00698 568 MobiDBLite consensus disorder prediction 446 495 - -
Taer5g00698 568 MobiDBLite consensus disorder prediction 366 432 - -
Taer5g00698 568 Gene3D Arfaptin homology (AH) domain-BAR domain 25 241 IPR027267 -
Taer5g00698 568 SUPERFAMILY BAR-IMD domain-like 32 230 IPR027267 -
Taer5g00698 568 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE 1 560 IPR037488 -
Taer5g00698 568 MobiDBLite consensus disorder prediction 351 518 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Taer5g00698 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
161075 Taer10g00957 Taer5g00698
162364 Taer2g01839 Taer5g00698
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Taer Taer-Chr10:21649898 Taer5g00698 Taer-Chr5:6003900 transposed
Taer Taer-Chr1:39561036 Taer5g00698 Taer-Chr5:6003900 wgd
Taer Taer-Chr10:7106402 Taer5g00698 Taer-Chr5:6003900 wgd
Taer Taer-Chr2:92790631 Taer5g00698 Taer-Chr5:6003900 wgd