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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Taer8g02253 ATGTCGAACGAAAAGGAACGAGAAACACATGTGTACTTGGCGAAGCTTGCTGAACAAGCCGAGCGTTACGAAGAGATGGTTGAAAGTATGAAGAGTGTTGCAAAACTAAATGTTGAACTTACTGTTGAAGAGCGAAACCTGCTTTCTGTTGGATACAAGAATGTGATTGGTGCAAGGAGGGCATCTTGGCGTATTATGTCATCAATTGAACAGAAAGAGGAATCAAAAGGGAATGAAAGCAATGTTACTCTAATTAAGGGCTACTGCAGGAAGGTTGAAGACGAGCTTGCCAAAATTTGCAGCGACATTCTTGAGATTATAGATAAGCATCTCATACCCTCTTCTGGCTCAGGGGAAGCTACTGTTTTTTACCACAAGATGAAAGGTGACTACTATCGGTACCTTGCTGAATTCAAGACAGACCAAGAAAGGAAAGATGCTGCTGAACAATCATTGAAAGGTTACGAGGCTGCTGCTGCTGCTGCAAACACAGAACTCCCTTCAACCCACCCAATTCGTCTTGGTTTGGCTCTTAATTTCTCAGTGTTTTACTATGAAATCATGAACTCCCCCGAGAGGGCTTGTCATTTGGCTAAACAAGCGTTTGATGAGGCAATTGCTGACCTGGACTCCTTAAGTGAAGAATCTTACAAGGACAGCACCTTAATCATGCAGCTTTTGAGAGATAACCTCACTCTTTGGACCTCTGATTTGCCCGAGGATGGAGGTGACGAAAGCCATCCCAAGGGTGAAGAATCCAAGCCAGCGGTAGCAGAGGAGAAGAAGCCGTGA 792 44.32 MSNEKERETHVYLAKLAEQAERYEEMVESMKSVAKLNVELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNESNVTLIKGYCRKVEDELAKICSDILEIIDKHLIPSSGSGEATVFYHKMKGDYYRYLAEFKTDQERKDAAEQSLKGYEAAAAAANTELPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIADLDSLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGDESHPKGEESKPAVAEEKKP* 264
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Taer8g02253 263 Gene3D - 1 246 IPR036815 -
Taer8g02253 263 PANTHER 14-3-3 PROTEIN 6 240 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Taer8g02253 263 Pfam 14-3-3 protein 13 235 IPR023410 -
Taer8g02253 263 MobiDBLite consensus disorder prediction 240 263 - -
Taer8g02253 263 SMART 1433-4 7 248 IPR023410 -
Taer8g02253 263 SUPERFAMILY 14-3-3 protein 6 237 IPR036815 -
Taer8g02253 263 PIRSF 14-3-3 1 247 IPR000308 -
Taer8g02253 263 ProSitePatterns 14-3-3 proteins signature 2. 217 236 IPR023409 -
Taer8g02253 263 ProSitePatterns 14-3-3 proteins signature 1. 45 55 IPR023409 -
Taer8g02253 263 Coils Coil 145 165 - -
Taer8g02253 263 PRINTS 14-3-3 protein zeta signature 88 112 IPR000308 -
Taer8g02253 263 PRINTS 14-3-3 protein zeta signature 154 180 IPR000308 -
Taer8g02253 263 PRINTS 14-3-3 protein zeta signature 39 68 IPR000308 -
Taer8g02253 263 PRINTS 14-3-3 protein zeta signature 208 237 IPR000308 -
Taer8g02253 263 PRINTS 14-3-3 protein zeta signature 181 207 IPR000308 -
Taer8g02253 263 PRINTS 14-3-3 protein zeta signature 119 141 IPR000308 -
Taer8g02253 263 Coils Coil 13 33 - -
Taer8g02253 263 MobiDBLite consensus disorder prediction 236 263 - -
Taer8g02253 263 FunFam 14-3-3 protein epsilon 1 248 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Taer8g02253 K06630 14-3-3 protein epsilon
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Taer Taer-Chr7:9742300 Taer8g02253 Taer-Chr8:62703862 dispersed
Taer Taer-Chr8:62703862 Taer9g02368 Taer-Chr9:19811922 dispersed
Taer Taer-Chr5:84319628 Taer8g02253 Taer-Chr8:62703862 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Taer1g01233 WGDA 2 259 14-3-3 family AT1G78300 85.328 4.12e-166 458.0
Taer1g02158 . 3 258 14-3-3 family AT1G78300 86.434 2.19e-163 451.0
Taer1g03795 WGDA 6 263 14-3-3 family AT2G42590 75.676 9.87e-145 404.0
Taer1g05460 . 1 263 14-3-3 family AT2G42590 76.046 1.96e-148 415.0
Taer2g01439 . 1 247 14-3-3 family AT5G65430 85.375 1.80e-161 447.0
Taer2g01576 . 6 263 14-3-3 family AT1G35160 85.714 4.24e-164 453.0
Taer2g01578 . 6 263 14-3-3 family AT1G35160 85.714 4.24e-164 453.0
Taer2g02439 ACH 10 252 14-3-3 family AT5G38480 88.066 1.52e-162 448.0
Taer3g03043 . 1 263 14-3-3 family AT2G42590 76.806 6.74e-151 423.0
Taer5g03272 . 6 260 14-3-3 family AT1G26480 82.745 8.17e-158 437.0
Taer7g01493 . 1 263 14-3-3 family AT2G42590 76.046 1.66e-149 416.0
Taer8g02253 . 6 267 14-3-3 family AT1G26480 83.206 6.01e-162 448.0
Taer9g02305 . 2 248 14-3-3 family AT5G10450 85.425 1.61e-158 441.0
Taer9g02368 . 3 259 14-3-3 family AT1G78300 85.992 1.59e-164 454.0
Taer10g01339 ACH 3 257 14-3-3 family AT3G02520 88.235 7.36e-166 457.0
Taer11g00056 WGDA 1 266 14-3-3 family AT1G35160 82.772 1.87e-160 447.0
Taer11g02539 WGDA 6 263 14-3-3 family AT2G42590 76.062 1.05e-143 401.0