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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Taer8g02266 ATGCCGACTTTAACGAAGCTTTATTCAATGCAAGAAGCTGCAGAGCACAATTCCGCCGGCGATTGCTGGATTGTTGTCGACGGAAAGGTGTATGATGTGTCATCATATCTGGAAGAACACCCAGGCGGAGACGATGTCCTCCTTCAGGTTACAGGGAAAGACGCTACAGATGAATTTGAAGATGCAGGCCATAGCAAGAGTGCCAGGGAACTAATGGAGACTTTCTGTGTTGGTGAGTTGGACCCATCAGACATCCCTCAACTTGAAGTTGTCTCGGAGAAGCAAAAAAGTTACATCCCTGAGAAGCTGGTTCACCTGAGCAAGCAATACTGGGTGGCTCCAGTGGCAGTTGTTGGCGTATCGGTGGTTGTCACATTCTTGTACTTACGCCGCAAGTAG 399 48.62 MPTLTKLYSMQEAAEHNSAGDCWIVVDGKVYDVSSYLEEHPGGDDVLLQVTGKDATDEFEDAGHSKSARELMETFCVGELDPSDIPQLEVVSEKQKSYIPEKLVHLSKQYWVAPVAVVGVSVVVTFLYLRRK* 133
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Taer8g02266 132 Gene3D - 3 86 IPR036400 -
Taer8g02266 132 SMART Cyt-b5-2 8 81 IPR001199 -
Taer8g02266 132 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Taer8g02266 132 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Taer8g02266 132 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Taer8g02266 132 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Taer8g02266 132 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Taer8g02266 132 FunFam Cytochrome b5 type B 3 85 - -
Taer8g02266 132 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Taer8g02266 132 Pfam Cytochrome b5-like Heme-Steroid binding domain 10 81 IPR001199 -
Taer8g02266 132 PANTHER CYTOCHROME B5 4 128 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Taer8g02266 132 SUPERFAMILY Cytochrome b5-like heme-steroid binding domain 4 89 IPR036400 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Taer8g02266 K23490 cytochrome b5
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5257038 Taer Taer5g02762 Taer-Chr5:79947605 Taer8g02266 Taer-Chr8:62810505
5261632 Taer Taer8g01379 Taer-Chr8:52918457 Taer8g02266 Taer-Chr8:62810505
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Taer1g07105 WGDA 38 273 NADPH P450 reductases gene family AT5G17770 36.434 1.08e-46 167.0
Taer2g01747 WGDA 38 273 NADPH P450 reductases gene family AT5G17770 39.147 7.34e-50 176.0
Taer4g01052 . 31 281 NADPH P450 reductases gene family AT5G17770 78.486 8.61e-149 416.0
Taer4g03206 . 31 281 NADPH P450 reductases gene family AT5G17770 74.104 4.35e-139 391.0
Taer5g03416 . 2 120 NADPH P450 reductases gene family AT1G60660 60.504 2.61e-48 149.0
Taer6g01150 . 30 281 NADPH P450 reductases gene family AT5G17770 82.54 2.14e-159 447.0
Taer8g00139 . 39 281 NADPH P450 reductases gene family AT5G17770 40.996 4.07e-65 205.0
Taer8g01379 . 1 133 NADPH P450 reductases gene family AT5G53560 72.932 5.75e-72 210.0
Taer8g02266 . 1 134 NADPH P450 reductases gene family AT1G26340 62.687 2.02e-60 180.0
Taer9g02652 . 6 83 NADPH P450 reductases gene family AT1G26340 38.462 1.28e-13 63.5