AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tako4g03043 ATGGATGCTAGTCGAAAGGAATGTGCTGCATGCATGGTTGGTCTACCAGTCCCATTCAGATACGAATACCTTATGGCCGAGACTATTTTTTCTCAGCTTCTTTTACTGCCTGAGCCCCCATTCAAACCCATGTATTACACACTTGTGATAATAGACCTGTGTAAGTCTCTTCCAGGTGCTTTTCCTGCAGTTGTGGCTGGGGCTGTTCGTGCCCTTTTTGATAGAATAAGTGAGTTAGATATGGAGTGTAGGACCCGCCTCATTCTTTGGTTCTCACACCATTTATCAAACTTTCAATTCATTTGGCCATGGGACGAGTGGGCATATGTCTTGGAACTTCCAAAGTGGGCCCCACAACGTGTATTTGTCCAAGAGGTTCTCGATAGAGAAGTCCGTTTATCATACTGGGATAAAGTAAAACAGAGCATTGAAAGCACTCCAGCTCTAGAAGAACTCCTCCCACCAAAAGGCGGGCCCGACTTCCGATACACTCCAGACCAAAACCAAGAAGATACCAACAACAAAACCGAACACACCCTTTCAACCGAACTTAATTCAATGGTAAAATCAAGAAAAACATCGCGTGACATCATCACATGGCTAGAAGAATCCGTGATCCCAAACAACAGCCTCCAGCTTGCATTAAGAGTAACCATTCAGACACTTCTGGACATCGGGTCCAAATCATTCACGCATCTGATTACAGTTCTGGAGAGGTACGGCCAGGTCATCGCGAGGGTCTGCCCGGATGAGGAAACGCAGGGGGTTTTGATTGCTGAGGTGGCGTCTTTTTGGAAAAATAGCGCGCAGATGACTGCCATTACGGTTGATAGGATGATGGGGTATAGACTTGTGTCTAATTTGGGGATTGTTAAGTGGGTGTTTTCAGAGACCAATGTTGAGCTTTTTCATACTTCCGATCGTTTGTGGGAGATTCTAAGAAACGCGCTTAACAAAACATACAACCGGATTACGGATTTAAGAAAGGAAATTCTTAACCTAAAAAAAAACGTTGCAAAAGCGGAACAAATTGCAGCAAAGGCAAAAGCTGAGCTGGACGAGGCTGAAACAAAGCTCATGCTTGTAGATGGTGAACCCGTGGTTGGTGAAAACCCTGCAAGAATGAAACGTTTGAAATCAAATGCTGCAAACACTAAAGATGATGAGGTGGCAGTTCGTGAGTCCCTAGAGTCTAAACAAGCTCTTTTTGCACGTGCCCTTGAAGAAAATCAGGCGTTATTCATGTCATTATACAAAAACTTCTCAAATGTTTTAATGGAAAGACTTGACGACACATTTGGAGAAAAAACCAGTGAGCATGAATCAATGGCTGTTGATGATGATGATAATAATGATAATGAAGACAATCCATCAATGGATACCGATAAAGAAAACGGAAATTCAAAAAGATATACTACAAGTGAGAAACAACAATGGTGTTTGTCAACTTTGGGTTATGTCAAGGCCTTTTCAAGACAATATGCATCCGAGGTTTGTCATTATTTTTCAATTAAGTCCCTCAACTTTGAGTAA 1533 42.47 MDASRKECAACMVGLPVPFRYEYLMAETIFSQLLLLPEPPFKPMYYTLVIIDLCKSLPGAFPAVVAGAVRALFDRISELDMECRTRLILWFSHHLSNFQFIWPWDEWAYVLELPKWAPQRVFVQEVLDREVRLSYWDKVKQSIESTPALEELLPPKGGPDFRYTPDQNQEDTNNKTEHTLSTELNSMVKSRKTSRDIITWLEESVIPNNSLQLALRVTIQTLLDIGSKSFTHLITVLERYGQVIARVCPDEETQGVLIAEVASFWKNSAQMTAITVDRMMGYRLVSNLGIVKWVFSETNVELFHTSDRLWEILRNALNKTYNRITDLRKEILNLKKNVAKAEQIAAKAKAELDEAETKLMLVDGEPVVGENPARMKRLKSNAANTKDDEVAVRESLESKQALFARALEENQALFMSLYKNFSNVLMERLDDTFGEKTSEHESMAVDDDDNNDNEDNPSMDTDKENGNSKRYTTSEKQQWCLSTLGYVKAFSRQYASEVCHYFSIKSLNFE 510
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tako4g03043 510 MobiDBLite consensus disorder prediction 150 175 - -
Tako4g03043 510 Coils Coil 317 365 - -
Tako4g03043 510 SUPERFAMILY ARM repeat 154 502 IPR016024 -
Tako4g03043 510 Gene3D - 169 507 - -
Tako4g03043 510 PANTHER CAP BINDING PROTEIN 4 502 IPR027159 GO:0000184(PANTHER)|GO:0000339(PANTHER)|GO:0000339(InterPro)|GO:0003729(PANTHER)|GO:0005634(PANTHER)|GO:0005845(PANTHER)|GO:0005846(InterPro)|GO:0005846(PANTHER)|GO:0006406(InterPro)
Tako4g03043 510 Gene3D - 1 157 - -
Tako4g03043 510 Pfam MIF4G like 178 497 IPR015174 GO:0016070(InterPro)
Tako4g03043 510 Pfam MIF4G like 19 143 IPR015172 GO:0016070(InterPro)
Tako4g03043 510 SUPERFAMILY ARM repeat 3 154 IPR016024 -
Tako4g03043 510 FunFam Nuclear cap-binding protein 1 157 - -
Tako4g03043 510 MobiDBLite consensus disorder prediction 436 472 - -
Tako4g03043 510 MobiDBLite consensus disorder prediction 456 470 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tako4g03043 K12882 nuclear cap-binding protein subunit 1