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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tako4g03281 ATGATCGATTTAATCACTACACTTGTTGGAGAAAAAGATCTGTCAAAATATTCTTTATCTATTCATCGCCGGATTGTTCAGTACAAAACTGCATATTACTCATTTTATATTCCCGTTGCATGTGCACTCCTTATGTTTGGAGAGAATTTGGATGATCATGTTCAAGTGAAAGATGTTCTTGTTGAAATGGGTACCTATTTCCAAGTACAGATTGGAACAGACATAGAAGACTTCAAATGTTCCTGGTTGGTTGTGAAAGCATTGGAACTTGCAAATGAGGAACAAAAGAAACTTCTGAATGAGAACTACGGGAGTAAGGATCCAGGCAGCGTGGAAAAAGTGAAGGGAGTCTTTGAAGATTACGAGAATAAGACTCATGAAAAGTTGGTGAAATCAATTGAAACTCACCCAAGCAATGCCGTACAAGCCGTGTTAAAATCTTTCTTGGGAAAAATATACAAGAGGCAAAAATAG 474 37.13 MIDLITTLVGEKDLSKYSLSIHRRIVQYKTAYYSFYIPVACALLMFGENLDDHVQVKDVLVEMGTYFQVQIGTDIEDFKCSWLVVKALELANEEQKKLLNENYGSKDPGSVEKVKGVFEDYENKTHEKLVKSIETHPSNAVQAVLKSFLGKIYKRQK 157
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tako4g03281 157 CDD Isoprenoid-Biosyn-C1 18 154 - -
Tako4g03281 157 SUPERFAMILY Terpenoid synthases 2 157 IPR008949 -
Tako4g03281 157 Pfam Polyprenyl synthetase 13 70 IPR000092 GO:0004659(InterPro)|GO:0008299(InterPro)
Tako4g03281 157 Pfam Polyprenyl synthetase 71 119 IPR000092 GO:0004659(InterPro)|GO:0008299(InterPro)
Tako4g03281 157 Gene3D Farnesyl Diphosphate Synthase 2 156 IPR008949 -
Tako4g03281 157 PANTHER FARNESYL-PYROPHOSPHATE SYNTHETASE 1 157 IPR039702 GO:0004161(PANTHER)|GO:0004337(PANTHER)|GO:0005737(PANTHER)|GO:0008299(InterPro)|GO:0016765(InterPro)|GO:0045337(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tako4g03281 K00787 farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tako2g07329 . 204 384 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 72.928 4.94e-91 268.0
Tako2g07328 . 42 384 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 76.385 0.0 556.0
Tako2g07327 . 204 384 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 66.851 2.53e-77 233.0
Tako2g07326 . 204 384 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 67.403 3.92e-81 243.0
Tako4g03282 . 204 384 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 72.928 4.94e-91 268.0
Tako4g03283 . 42 384 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 76.385 0.0 556.0
Tako4g03281 . 204 384 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 66.851 2.53e-77 233.0
Tako4g03280 . 204 384 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 67.403 3.92e-81 243.0
Tako4g03284 . 42 161 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 75.0 1.91e-62 194.0
Tako6g03189 . 250 298 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 41.176 2.83e-06 42.7