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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tako4g03299 ATGATGCCTCAACAAGAACCCCAAACTTGTCATCTCTCTGCACTTTCAGCTCCTGAATCGATGGCTTCAATCGGAGAAATGAAAGATTTTGTGGATAGTGGAAAGAGTAGTATGTGTAGAGGAAGCACAAGCACCGATGTAAGCGATGAAAGCAGTTACAGTACTTTAAGCACCACCGTTAGCAAACCTCATAAATCAAACGATTCAAGATGGGAAGCGATTCAAACCGTTCGATTGCAAGATGGGAATCTGGGTTTGCACCATTTCCGATTGTTGAAACGATTGGGGTGCGGGGATATCGGAAGTGTTTATCTTTGCGAGCTTACTGGTACCAAATCGTATTTTGCGATGAAGGTGATGGATAAAGTGTCGCTTCAAGGGCGTAATAAGTTGTTAAGAGCGCAAACAGAAAGGGAAATTCTTCAATCTTTGGATCATCCTTTTCTTCCGAGTTTATATACTCATTTCGAAACGGAGAAATTCTCGTGTTTGGTTATGGAGTTCTGCCCCGGCGGCGATTTACATATGCTCCGGCAGCGGCAGCCGGGGAAACGATTCTGTGAACAAGCTGTCAAATTTTATGTTGCTGAGATACTTCTCGCCATGGAGTACCTTCATATGCTTGGAATCGTGTATCGTGATTTGAAGCCGGAAAATGTTCTTGTTAGGGAAGACGGACATATAATGCTTTCGGATTTTGATCTTTCACTTCGTTGTTCGGTTAATCCGACGATGGTTAATTCCGCGTCTTTACAGAACGATCAGGGGCAGAAGAACTCCGGTTACTGTGTCCAGCCGGCGTGCATCGAACCGCTGCCGTCGTCGTGTATACAACCTTCATGTGTAGTTTCTACATCCTGTTTCTCTCCACGACTGTTTAGATCGAAGAAAGATAAGAAATCGAAGTCGGAAATTGGAAACCAGGTGACCCCGTTACCGGAGCTTATGGCGGAGCCGACTGGTGTCCGGTCGATGTCGTTTGTTGGGACGCATGAGTATTTGGCGCCGGAGATTATAAAAAACGAAGGTCATGGATCCGCGGTGGATTGGTGGACGCTTGGTATCTTTTTGTACGAGTTGCTTTTCGGGAAAACTCCGTTCAAAGGGGTGGGTAATCGAGCGACTTTGACGAACGTGGTTGGGCAACCGCTGAGGTTCCCGGAATCACCAGTTGTGAGTTTTCCGGCAAGGGATCTGATAAGAGGTTTGCTGGTGAAAGAACCACGGCAACGATTGGCATACAAGAGAGGGGCTACTGAAATCAAACAACATCCTTTCTTTGAAGGTGTTAATTGGGCGTTGATACGTTGTGCAAGTCCACCGGAAATCCCAAAGGCGGTGGCTTTTGAGCGGATTTCTTCTCCGATGACATCTCTTAGCGAGAAAAAGGTTGCTGCCGTCGTGGCTGCACCGGAGAAGAAGGGCTTCGAGAATTATCTTGAGTTTGATTTCTTCTGA 1458 46.43 MMPQQEPQTCHLSALSAPESMASIGEMKDFVDSGKSSMCRGSTSTDVSDESSYSTLSTTVSKPHKSNDSRWEAIQTVRLQDGNLGLHHFRLLKRLGCGDIGSVYLCELTGTKSYFAMKVMDKVSLQGRNKLLRAQTEREILQSLDHPFLPSLYTHFETEKFSCLVMEFCPGGDLHMLRQRQPGKRFCEQAVKFYVAEILLAMEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCSVNPTMVNSASLQNDQGQKNSGYCVQPACIEPLPSSCIQPSCVVSTSCFSPRLFRSKKDKKSKSEIGNQVTPLPELMAEPTGVRSMSFVGTHEYLAPEIIKNEGHGSAVDWWTLGIFLYELLFGKTPFKGVGNRATLTNVVGQPLRFPESPVVSFPARDLIRGLLVKEPRQRLAYKRGATEIKQHPFFEGVNWALIRCASPPEIPKAVAFERISSPMTSLSEKKVAAVVAAPEKKGFENYLEFDFF 485
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tako4g03299 485 ProSitePatterns Serine-Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tako4g03299 485 Pfam Protein kinase domain 324 427 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tako4g03299 485 Pfam Protein kinase domain 90 241 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tako4g03299 485 Gene3D Transferase(Phosphotransferase) domain 1 324 445 - -
Tako4g03299 485 Gene3D Transferase(Phosphotransferase) domain 1 169 238 - -
Tako4g03299 485 FunFam Serine-threonine-protein kinase D6PK-like 87 172 - -
Tako4g03299 485 MobiDBLite consensus disorder prediction 36 64 - -
Tako4g03299 485 ProSiteProfiles Protein kinase domain profile. 89 427 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tako4g03299 485 Gene3D Phosphorylase Kinase; domain 1 87 168 - -
Tako4g03299 485 CDD STKc-phototropin-like 87 445 - -
Tako4g03299 485 SMART serkin-6 89 427 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tako4g03299 485 MobiDBLite consensus disorder prediction 33 67 - -
Tako4g03299 485 FunFam serine-threonine-protein kinase D6PK-like 173 240 - -
Tako4g03299 485 SUPERFAMILY Protein kinase-like (PK-like) 64 454 IPR011009 -
Tako4g03299 485 PANTHER FLIPPASE KINASE 1-RELATED 26 450 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Tako4g03299 485 FunFam serine-threonine-protein kinase D6PK-like 322 445 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tako4g03299 K08286 protein-serine/threonine kinase [EC:2.7.11.-]
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tako1g00123 ACH 257 353 AGC Kinase gene family AT4G33080 80.412 3.92e-54 174.0
Tako1g00128 . 667 974 AGC Kinase gene family AT1G45160 31.715 4.84e-37 147.0
Tako1g03176 . 4 518 AGC Kinase gene family AT4G33080 77.457 0.0 825.0
Tako1g03177 . 4 518 AGC Kinase gene family AT4G33080 77.519 0.0 821.0
Tako1g03630 . 11 249 AGC Kinase gene family AT2G26700 65.447 1.02e-102 306.0
Tako1g04052 . 92 578 AGC Kinase gene family AT3G27580 69.433 0.0 662.0
Tako1g04625 . 228 467 AGC Kinase gene family AT3G14370 59.514 1.69e-93 281.0
Tako1g04646 . 228 467 AGC Kinase gene family AT3G14370 51.037 5.20e-71 221.0
Tako1g06254 . 180 282 AGC Kinase gene family AT3G27580 26.786 4.17e-10 53.9
Tako2g02351 . 54 533 AGC Kinase gene family AT5G58140 64.272 0.0 611.0
Tako2g02507 . 171 353 AGC Kinase gene family AT4G33080 79.781 4.08e-109 320.0
Tako2g05336 . 250 343 AGC Kinase gene family AT1G51170 32.692 1.09e-08 50.8
Tako2g05401 . 2 499 AGC Kinase gene family AT5G40030 70.472 0.0 696.0
Tako2g05488 . 98 544 AGC Kinase gene family AT5G47750 71.366 0.0 642.0
Tako2g05615 . 471 896 AGC Kinase gene family AT3G52890 59.953 2.31e-176 521.0
Tako2g06035 . 71 451 AGC Kinase gene family AT3G44610 57.292 6.36e-153 440.0
Tako2g07022 . 71 1164 AGC Kinase gene family AT5G62310 58.744 0.0 1237.0
Tako3g03898 . 165 355 AGC Kinase gene family AT3G08720 78.125 9.41e-111 323.0
Tako3g04413 . 92 586 AGC Kinase gene family AT5G47750 81.275 0.0 821.0
Tako3g04414 . 92 586 AGC Kinase gene family AT5G47750 81.275 0.0 821.0
Tako3g04417 . 85 586 AGC Kinase gene family AT5G47750 80.747 0.0 822.0
Tako3g04418 . 85 586 AGC Kinase gene family AT5G47750 80.747 0.0 822.0
Tako3g06411 . 40 263 AGC Kinase gene family AT5G04510 21.941 8.04e-10 61.2
Tako3g06412 . 40 263 AGC Kinase gene family AT5G04510 21.941 8.04e-10 61.2
Tako4g00094 . 372 578 AGC Kinase gene family AT3G27580 57.143 1.26e-68 215.0
Tako4g00103 . 372 578 AGC Kinase gene family AT3G27580 57.619 2.97e-70 219.0
Tako4g00383 . 1 513 AGC Kinase gene family AT1G03920 66.667 0.0 672.0
Tako4g00563 . 5 386 AGC Kinase gene family AT3G25250 54.569 1.35e-145 418.0
Tako4g00611 . 250 321 AGC Kinase gene family AT1G51170 36.0 2.42e-07 47.8
Tako4g00909 . 131 391 AGC Kinase gene family AT3G08730 34.066 2.87e-38 144.0
Tako4g01214 . 131 373 AGC Kinase gene family AT3G08730 36.047 9.95e-38 146.0
Tako4g01584 . 1 464 AGC Kinase gene family AT3G08720 61.67 0.0 580.0
Tako4g02059 . 1 1294 AGC Kinase gene family AT3G17850 60.06 0.0 1366.0
Tako4g02060 . 1 1147 AGC Kinase gene family AT3G17850 59.508 0.0 1190.0
Tako4g03299 . 115 586 AGC Kinase gene family AT5G47750 76.261 0.0 733.0
Tako4g04014 . 61 473 AGC Kinase gene family AT3G14370 64.066 0.0 530.0
Tako4g04411 . 751 885 AGC Kinase gene family AT5G62310 26.667 2.78e-12 60.8
Tako4g05559 . 110 555 AGC Kinase gene family AT1G79250 71.183 0.0 667.0
Tako5g02362 . 119 491 AGC Kinase gene family AT5G58140 32.713 2.44e-55 194.0
Tako5g02635 . 11 504 AGC Kinase gene family AT5G09890 77.328 0.0 814.0
Tako5g02969 . 1 911 AGC Kinase gene family AT3G17850 55.29 0.0 884.0
Tako5g02983 . 1 1288 AGC Kinase gene family AT3G17850 62.938 0.0 1513.0
Tako5g03266 . 30 1154 AGC Kinase gene family AT5G62310 58.6 0.0 1284.0
Tako5g03351 . 30 467 AGC Kinase gene family AT3G08720 66.816 0.0 600.0
Tako5g03359 . 208 467 AGC Kinase gene family AT3G08720 75.191 2.42e-147 419.0
Tako5g03365 . 59 183 AGC Kinase gene family AT3G08720 50.4 2.58e-30 111.0
Tako5g03751 . 4 486 AGC Kinase gene family AT3G10540 76.21 0.0 780.0
Tako6g03250 . 134 234 AGC Kinase gene family AT5G58140 43.636 2.74e-21 97.1
Tako6g03756 . 27 547 AGC Kinase gene family AT3G23310 82.15 0.0 903.0
Tako6g03757 . 27 547 AGC Kinase gene family AT3G23310 82.15 0.0 903.0
Tako6g04044 . 81 760 AGC Kinase gene family AT2G44830 64.971 0.0 841.0
Tako6g04045 . 81 765 AGC Kinase gene family AT2G44830 65.224 0.0 853.0
Tako6g04110 . 171 336 AGC Kinase gene family AT4G33080 78.313 2.68e-94 281.0
Tako7g00524 . 353 490 AGC Kinase gene family AT4G33080 68.116 2.68e-58 192.0
Tako7g01161 . 4 438 AGC Kinase gene family AT2G34650 60.606 0.0 530.0
Tako7g01551 . 40 263 AGC Kinase gene family AT5G04510 23.013 4.63e-09 58.9
Tako7g01718 . 360 488 AGC Kinase gene family AT4G33080 65.891 1.11e-52 176.0
Tako7g02054 . 135 233 AGC Kinase gene family AT5G58140 44.444 9.03e-21 95.1
Tako7g02708 ACH 171 353 AGC Kinase gene family AT4G33080 80.874 3.59e-111 325.0
Tako7g04253 . 1 809 AGC Kinase gene family AT1G45160 48.259 0.0 654.0
Tako7g04254 . 1 1007 AGC Kinase gene family AT1G45160 50.678 0.0 912.0
Tako7g04255 . 1 809 AGC Kinase gene family AT1G45160 48.082 0.0 654.0
Tako8g01170 . 268 328 AGC Kinase gene family AT1G53700 61.29 7.96e-20 84.3
Tako8g01282 . 1 517 AGC Kinase gene family AT2G20470 77.842 0.0 837.0
Tako8g02914 . 111 241 AGC Kinase gene family AT3G45780 69.173 1.98e-50 175.0
Tako8g03400 . 309 536 AGC Kinase gene family AT5G47750 68.559 4.49e-110 326.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Tako Pkinase 2.4e-36 CL0016 PK AGC_RSK-2