AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tako4g03304 ATGGCACTTCTTCACTTGCCGGCAATCAAAGTATATTGCTTGACAGAGAAGAAGCATAAAGATGTTCAAAGCAGACCATTGAAGCTTGGAGAATCTAACTCGAGAACCACAACTTACCGAAAAGGTTCATTTCAACAAGAACGCAAACCCCAGAAAGTGAGTCTGGAAATCTCACCTCATAGAGCTGTGTCCGCAGTGAGGTTAATGCGGATAGAATTCGGTGGTGCTTTTGCTGACCTTTTGAACGAGAAAGGAAAGGGGTCAGGTGATAACGAGATGGGATATGTTGAAAGAACTCTTGGATTTTGCACTCGAGATTTGGATGATAGAGATCTCAGATTGATTCTGCGGATTGGATTTTATGAAATTGTGAAGCTAGAAGTCCCGTCATATGCTGTTATTAATGAGAATGTGGAGCTTGCAAAAACTGCCCTTAGGCCAGGTGCTGGTAACATGGTCAATGGGATTTTAAGGAAGCTTGTTGCACTTAAGGAAAGTAACTCTCTTCCTTTGCCTCAATTGGAGGGTGATGATCGTGCACAAGCACGTGCTCTTGCTACTATTTATTCTCACCCAGTTTGGATGGTGAGGCGCTGGATAAAAGAGCTTGGACGTGAAGACGCTATTAAGTTGATGAAATGGAATAACAGCAATCCAAGTTTTAGTTTAAGGGCTAATAGAGGAAAAGGTTTTACACGATCAGATCTTGTGTCACGACTTGAAACATTAAATGTACCGTATGAGCTATCTCCTCACTTGGATGATTTTGTTCGTATCACCACAGGGATGCAGAGTGTTTTACAAGATGGGTTACTAAAAGAAGGTTTATGTTCTGTCCAAGATGAAAGTGCAGGTTTGGTAATTTCCATCGTTGACCCACAACCTGGAGAGACCATAATCGACTGTTGTGCTGCTCCAGGTGGGAAGACGCTCTTCATGGCTGCCCGTTTAAATGGCCAAGGTATGGTAACTGCAATTGACATAAATAAAGGGCGGTTAAGGATCCTGAAAGAGACGGCTAAATTGCAACAACTTGATGATGTCATCACTACTGTTCACGCCGATCTTTGTACATTTCCTGAGAATAATGATGTGAAATATGATAAAGTGTTGTTGGATGCTCCTTGTTCTGGACTCGGTGTTCTTTCCAAGAGAGCAGACTTGCGATGGAATAGGAAGTCTGAAGATATGGAACAACTTAAAAGCTTGCAAGATCAACTTCTTGATGCAGCTTCCATGTTGGTAAAAGCAGGTGGAGTACTGGTATACAGTACATGTTCTATTGATCCGGAAGAGAATCAAGATAGGGTAGCTGCATTTCTTCTTAGACATCAGGAATACACGGTAGATTCTTCAGAGAGATACATATCGTCTGAATTTTTGACAAATGAGGGTTATTATATGTCTACACCTGTGAAGCATTCTCTTGATGGAGCATTTGCAGCACGCCTCATTCGTTGCTCTTGA 1467 41.99 MALLHLPAIKVYCLTEKKHKDVQSRPLKLGESNSRTTTYRKGSFQQERKPQKVSLEISPHRAVSAVRLMRIEFGGAFADLLNEKGKGSGDNEMGYVERTLGFCTRDLDDRDLRLILRIGFYEIVKLEVPSYAVINENVELAKTALRPGAGNMVNGILRKLVALKESNSLPLPQLEGDDRAQARALATIYSHPVWMVRRWIKELGREDAIKLMKWNNSNPSFSLRANRGKGFTRSDLVSRLETLNVPYELSPHLDDFVRITTGMQSVLQDGLLKEGLCSVQDESAGLVISIVDPQPGETIIDCCAAPGGKTLFMAARLNGQGMVTAIDINKGRLRILKETAKLQQLDDVITTVHADLCTFPENNDVKYDKVLLDAPCSGLGVLSKRADLRWNRKSEDMEQLKSLQDQLLDAASMLVKAGGVLVYSTCSIDPEENQDRVAAFLLRHQEYTVDSSERYISSEFLTNEGYYMSTPVKHSLDGAFAARLIRCS 488
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tako4g03304 488 Pfam 16S rRNA methyltransferase RsmB-F 290 484 IPR049560 -
Tako4g03304 488 Gene3D Sun protein; domain 3 183 284 - -
Tako4g03304 488 PRINTS Viridiplantae FMU-related RCMT signature 66 89 IPR023268 -
Tako4g03304 488 PRINTS Viridiplantae FMU-related RCMT signature 90 106 IPR023268 -
Tako4g03304 488 PRINTS Viridiplantae FMU-related RCMT signature 445 457 IPR023268 -
Tako4g03304 488 Gene3D - 96 182 IPR035926 -
Tako4g03304 488 PRINTS RNA (C5-cytosine) methyltransferase signature 469 486 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Tako4g03304 488 PRINTS RNA (C5-cytosine) methyltransferase signature 368 380 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Tako4g03304 488 PRINTS RNA (C5-cytosine) methyltransferase signature 418 434 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Tako4g03304 488 PRINTS RNA (C5-cytosine) methyltransferase signature 271 285 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Tako4g03304 488 PRINTS RNA (C5-cytosine) methyltransferase signature 300 310 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Tako4g03304 488 FunFam 16S rRNA (Cytosine(967)-C(5))-methyltransferase RsmB 178 282 - -
Tako4g03304 488 ProSiteProfiles SAM-dependent MTase RsmB-NOP-type domain profile. 211 487 IPR001678 GO:0008168(InterPro)
Tako4g03304 488 Pfam Methyltr-RsmF-B-like, ferredoxin-like domain 191 262 IPR054728 -
Tako4g03304 488 Pfam NusB family 111 160 IPR006027 GO:0003723(InterPro)|GO:0006355(InterPro)
Tako4g03304 488 CDD AdoMet-MTases 298 424 - -
Tako4g03304 488 Gene3D Vaccinia Virus protein VP39 286 488 IPR029063 -
Tako4g03304 488 PANTHER NOP2 YEAST -RELATED NOL1-NOP2-FMU SUN DOMAIN-CONTAINING 53 485 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Tako4g03304 488 SUPERFAMILY NusB-like 104 195 IPR035926 -
Tako4g03304 488 MobiDBLite consensus disorder prediction 27 45 - -
Tako4g03304 488 MobiDBLite consensus disorder prediction 24 45 - -
Tako4g03304 488 FunFam Ribosomal RNA small subunit methyltransferase B 283 487 - -
Tako4g03304 488 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 183 486 IPR029063 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tako4g03304 K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]