AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tako4g03312 ATGTCGACCGTAATTTCCAATTCAAAAAAGAGAAAAACGTTACGCGAACCACAATCCCAAAAAATCGTGCACACATACAACATCGACATCGACAGCGATGATGTGGTCTCCGACGCAAGTCAAACATCGGGTCAATGCGCAACAAACATGGCCGATTCCATCACGGCGGTAGAATCCATCTTAATGTACGATTTCAAAAACAAAAGCTTATTAGAAGCTGCTTTAACGCATTCTTCATACACCGAGAGCCCCTCATACCAACGGCATGAATTTGTGGGCGATGCTGTTCTTGGACTCGCCATCACTGATTTCTTTGACTTGGCGTACCCTGATCTTGACCCTGGTCAACTCTCTCTCCTCCGCGCCGCCAATATCAGCACGGAAAAACTCGCACGTGTGGCCGTCCGTAACGGCCTCTACAAATACGTTCGCCATAATACCACCGTTCTCAATGATAAGGTAAGGGAGTTTGTTATTGCGGTTGAGGAAGAAGACGATATAGTGGTCCATGGCGGGCAAATGAAAGCGCCAAAAGTTCTTGCTGATATTGTCGAATCGATTGTTGGAGCTGTATATGCTGATTGTGGACGTGATTTACAAAGCTTGTGGGTGATAATTAAAGATCTTCTTGAACCGATTATAATGTTAAATGTGCTGGAGAAACAGCCACAACCTATTACGGTGCTTTTTGAGGCATGTCAGAAAGAGGGCAAGACTGTTGACATTCAGCATTGGAGGAAAGGTGAAAGGAACATTGCGAGTGTGTATATAGATGGGAAACTTATCGCGTCTGGATCTTCAGAGAACAAGGAGAATGCAAAACTTCAGGCAGCTGAGGTGGCGTTATCTAAGCTAACGAGGCTAAAAAGCACGACTGCAATGAGTCTACATTTGAATGCTAAAGGGGAAATCAAAGGGGCCAAAAGGAAAATACATGAAGTTTGCAACAAAAGAAGGTGGCCCAAAGCAAGTTACAGAATGGAGCAAGAATTGGGTCCAGCACACGATAGGCGATATATAGCATCTGTGAAAATTGAATTGTCTGATAAGAATCAGATATTTTATATGAAGGGAGAAGAGAGGTCAAAAGTCAAGGAAGCTGAAAATTCTGCAGCCTCACTGCTTTATTATTATTTAAGAGAATTGGGATATATATAA 1158 43.09 MSTVISNSKKRKTLREPQSQKIVHTYNIDIDSDDVVSDASQTSGQCATNMADSITAVESILMYDFKNKSLLEAALTHSSYTESPSYQRHEFVGDAVLGLAITDFFDLAYPDLDPGQLSLLRAANISTEKLARVAVRNGLYKYVRHNTTVLNDKVREFVIAVEEEDDIVVHGGQMKAPKVLADIVESIVGAVYADCGRDLQSLWVIIKDLLEPIIMLNVLEKQPQPITVLFEACQKEGKTVDIQHWRKGERNIASVYIDGKLIASGSSENKENAKLQAAEVALSKLTRLKSTTAMSLHLNAKGEIKGAKRKIHEVCNKRRWPKASYRMEQELGPAHDRRYIASVKIELSDKNQIFYMKGEERSKVKEAENSAASLLYYYLRELGYI 385
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tako4g03312 385 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 224 287 IPR014720 -
Tako4g03312 385 PANTHER DICER-RELATED 32 360 - GO:0003723(PANTHER)|GO:0004525(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030422(PANTHER)
Tako4g03312 385 Pfam Double-stranded RNA binding motif 225 285 IPR014720 -
Tako4g03312 385 Pfam Double-stranded RNA binding motif 307 375 IPR014720 -
Tako4g03312 385 SUPERFAMILY dsRNA-binding domain-like 304 384 - -
Tako4g03312 385 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 306 381 IPR014720 -
Tako4g03312 385 Pfam Ribonuclease III domain 87 196 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Tako4g03312 385 Gene3D - 220 295 - -
Tako4g03312 385 SMART DRBM-3 307 380 IPR014720 -
Tako4g03312 385 SMART DRBM-3 225 286 IPR014720 -
Tako4g03312 385 SUPERFAMILY RNase III domain-like 52 214 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Tako4g03312 385 SUPERFAMILY dsRNA-binding domain-like 178 289 - -
Tako4g03312 385 Gene3D - 312 381 - -
Tako4g03312 385 SMART riboneu5 69 219 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Tako4g03312 385 CDD RIBOc 69 214 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Tako4g03312 385 ProSiteProfiles Ribonuclease III family domain profile. 54 196 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Tako4g03312 385 FunFam Endoribonuclease dicer-like 1 48 217 - -
Tako4g03312 385 Gene3D Ribonuclease III domain 42 218 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tako4g03312 - -