AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tako4g03597 ATGGAGTCGATAATTGCAAGGGCGCTGGAGTATACTCTCAAGTACTGGCTTAAATCCTTCACTAGAGATCAGTTCAAGTTACAAGGACGAACTGTTCAGCTCTCGAATTTAGATATAAACGGTGATGCGTTACATGCGAGCCTTGGATTGCCTCCAGCTTTGAATGTTACAACCGCGAAAGTCGGGAAGTTAGAAATTATACTTCCTTATTTGAGCAATGTACAAGTTGAACCTATTGTTGTGCAAATCGATAAACTCGATTTGGTATTGGAAGAAAATGATGATTTGGATGCATATAAGAGCACAGACAGTGCACAAACGCCATCTACTCCTGCAAAAGGTAGTGGATATGGATTTGCAGACAAGATTGCAGATGGAATGACATTAGAAGTAGGGACTGTCAATCTTTTACTTGAGACTCATGGAGGTGCTAGACGTCGTGGAGGGGCAACTTGGGCATCACCAATGGCATCTATAACTATCCGCAACCTCTTGCTTTATACCACAAATGAAAACTGGCAGGCTGTAAACCTTAAGGAAGGCAGGGACTTTTCAAATGACAAGAAGTTCATCTACGTGTTCAAAAAACTTGAATGGGAGCATCTATCAATCGACCTTCTACCTCACCCTGACATGTTTGCAGCATTTTCTGAAGGTGCATTTAAAGATGATGATGGTGCAAAGCGAGTTTTTTTTGGTGGTGAGCGGTTTCTTGAAGGAATTTCAGGAGAAGCTTATATTACCATACAAAGAACAGAGCTTAATAGTCCATTAGGGTTAGAACTTCAACTACATATCCCTGAAGCAGTGTGTCCAGCATTGAGTGAACCAGGATTACGAGCTCTTCTTCGATTTTTTACGGGATTGTATGTGTGTTTAAATAGAGGAGACATGAATCCAAATGCTCAAGAGCGATCAGCTGAAGCTGCAGGGCGTACACTAGTCTCCATTATGGTGGACCATATATTCTTTTGCATCAAAGATACTGACTTCAAGTTAGACCTTTTGATGCAGTCACTTCTCTTTTCTCGGGCAAGTCTTTCTGATGGAGAAATCACCAAATGTTTAACTCGGGTCATGATAGGTGGACTCCTTCTACGGGACACTTCCTCTCGCCCACCATGCGCGTTAGTACAACCATCGATGCAGGATGCCTCAGAGGAACCACTACACATTCCAGATTTCGGAAAGAATTTCTGTCCTCCAATATATCCATTAGGCGATCACCAATGGAAATTAAGCGACCGGGTCCCACTCATCTCCCTCCATTGTCTTCAATACATGCCCTCACCTACCCCACCATCATTCTCTACACAAACCGTCATTGATTGCCAGCCTCTTATGATACATTTACAAGAGGAATCCTGTCTAAGAATCTCATCCCTACTAGCAGATGGACTCATGGTCAACTCCAATCACATCTCACCCGATTCCTCCATCAACTCCCTTGAATTAAACATCAAAGGAATCGACATCACAATCCCACTCCAAAGCAATTCACTCAATAACTCCTTTACTGGAGCAAAACTCCATATTAAAGATCTATTCTTCCACGAATCACCTTCCTTGCGCCTCAAGCTACTCCACCTGGAAAAAGACCCCGCGTGTTTCTCCTTCTGGAAAGGCCAGCCAATCGACTCCAGCCAAAAGAAATCGACAGCTGGCGCCTCCCTCATCAACCTCTCGTTACTTTCCCATTCCACCACCGGAATCGGTGATTCCGATTCCGATTCCGGTTTCGGATTCCAGTGTGTGGAAGTGAAGGACGCGTGTGTGCAGGTCGCGATGGTGACGGCAGACGGGTCCCCGATGTCCGACGTCCCACCGCCAGGTGGCGTCGTGAGAGTGGGCGTCGCGTGTGAAGAGTATAAGTCAAACACGTCCGTTGACCAGCTGTTTTTCGTCCTGGATCTGTACGCGTATTTCGGTACAGTCAGCGAGAAGTTAGCCTCCGTTGCAAAAACCAAAAATAAAAATGAAAATGAAAAGGTGGTGAGTTTAATTGAGAAAGTTCCGGGAGATACGGCGGTTAGTTTGGCGGTTAGGAATCTCAAACTAACGTTTCTAGAATCTTCCATAGGTGAAATAATCCCTTTGGTGGAGTTTTTCGGAGATGATCTTTTCATGGAAGTTACACATAGGACCCTCGGTGGCGCAATGGCAATTTCGTCGAATCTACGGTGGGAAAAAGTCCAGGTGGACTGCGCCGAAACCGAAAAAAAATTATTAATTCCAAATGGCAACCAAAATGGTAAACAAAATTATAAATTAAGACCTGTTTTTTGGGTGGTAAAAGGAAGGAAAAGTCAACCGTTTTTATATCTAAAAATGGTACATGTGATTCCGTATAATTCACGAGATAACGAATGTCATAGTGTGAGTCTATCTGCTTGTGTTGCTGGTGTACGGTTAGCCGGCGGGATGAGCTACACCGAATCACTACTCCACCGGTTCGGAATCCTACGACCCGATGGTGGGCCCTCGGACGGGCTTTCGAGAGGTTTGGACCGGTTATCCGCGGGCCCGTTTTCGAAGCTTTTTAAACCGTCGGGTCATGAGGAGAAGGATGGTGGTGGGGGCGGTGGGTATTTGCAGGTTGGCGCGCCTGATGACGTGGACGTGGTGCTGGAGTTGAAGGATTGGTTGTTTGCATTGGAGGGTGCTGACGTGGCGGAACGATTGGGTTTGGATAGGGAGGAGAGGTCGTGGCATACGAGTTTCGAGAGTTTTAAAGTTAAGGCAAAAAGTTGCATGGTGAATGGGAAAAAGAGGTCTAAGCATCCTGTTGAATCGGTCACGGTTGGTGTTGAAGGCTTACAAACATTAAAACCACAACAACATAAAAAAGAAATACAAACAAACGGGCACAAAGAAACCATAGAGTCACATCATGGAGGGGTCAACCTTGAATCCCACATAGTCTTATCCGAAGACAACAACAATGATGATGGTATCGATGGAGTAATCAAGTGGATAGTTGAAAGCCTAAAATTCTCCGTCAAACATCCCGTCGAGGCAATTGTAACCAAACACGAGCTACAACATGTTGCGAAACTATGCAAGTCGGAAGTCGACTCCATGGGGAGAATCACAGCTGGCGTTTTACGTGTCTTGAAGTTAGAAAATTCTATCGGTCAGACTGCAATGGATCAGTTAACTAATCTCGGAAGTGAAGGGTTTGATAAAATCTTCTCACAAAAAGATAATAGTAGTTCTTCAGATGACTTTAATTCAACATTGACTTCACTTGAAGCCACATTGTTGGATACACAGACAAATTGTGTAGCTCTTGTTGATAACTTAGGCAGTTCTGAATCTATGAAGACACACGTTCAGAGTGTACAACAACTTAACCAGAAACTAGAGAGTATGCACAAGTTATTGGCTAAGTTGCAGACCAAGGAATATGTTGTATAA 3417 44.34 MESIIARALEYTLKYWLKSFTRDQFKLQGRTVQLSNLDINGDALHASLGLPPALNVTTAKVGKLEIILPYLSNVQVEPIVVQIDKLDLVLEENDDLDAYKSTDSAQTPSTPAKGSGYGFADKIADGMTLEVGTVNLLLETHGGARRRGGATWASPMASITIRNLLLYTTNENWQAVNLKEGRDFSNDKKFIYVFKKLEWEHLSIDLLPHPDMFAAFSEGAFKDDDGAKRVFFGGERFLEGISGEAYITIQRTELNSPLGLELQLHIPEAVCPALSEPGLRALLRFFTGLYVCLNRGDMNPNAQERSAEAAGRTLVSIMVDHIFFCIKDTDFKLDLLMQSLLFSRASLSDGEITKCLTRVMIGGLLLRDTSSRPPCALVQPSMQDASEEPLHIPDFGKNFCPPIYPLGDHQWKLSDRVPLISLHCLQYMPSPTPPSFSTQTVIDCQPLMIHLQEESCLRISSLLADGLMVNSNHISPDSSINSLELNIKGIDITIPLQSNSLNNSFTGAKLHIKDLFFHESPSLRLKLLHLEKDPACFSFWKGQPIDSSQKKSTAGASLINLSLLSHSTTGIGDSDSDSGFGFQCVEVKDACVQVAMVTADGSPMSDVPPPGGVVRVGVACEEYKSNTSVDQLFFVLDLYAYFGTVSEKLASVAKTKNKNENEKVVSLIEKVPGDTAVSLAVRNLKLTFLESSIGEIIPLVEFFGDDLFMEVTHRTLGGAMAISSNLRWEKVQVDCAETEKKLLIPNGNQNGKQNYKLRPVFWVVKGRKSQPFLYLKMVHVIPYNSRDNECHSVSLSACVAGVRLAGGMSYTESLLHRFGILRPDGGPSDGLSRGLDRLSAGPFSKLFKPSGHEEKDGGGGGGYLQVGAPDDVDVVLELKDWLFALEGADVAERLGLDREERSWHTSFESFKVKAKSCMVNGKKRSKHPVESVTVGVEGLQTLKPQQHKKEIQTNGHKETIESHHGGVNLESHIVLSEDNNNDDGIDGVIKWIVESLKFSVKHPVEAIVTKHELQHVAKLCKSEVDSMGRITAGVLRVLKLENSIGQTAMDQLTNLGSEGFDKIFSQKDNSSSSDDFNSTLTSLEATLLDTQTNCVALVDNLGSSESMKTHVQSVQQLNQKLESMHKLLAKLQTKEYVV 1138
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tako4g03597 1138 Coils Coil 1114 1134 - -
Tako4g03597 1138 PANTHER UNCHARACTERIZED 1 740 IPR026728 -
Tako4g03597 1138 Pfam VPS13-like, N-terminal 1 102 IPR026854 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tako4g03597 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
165144 Tako4g03597 Tako7g04900
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5311459 Tako Tako4g03597 Tako-Chr4:79269904 Tako7g04900 Tako-Chr7:111810947
5337709 Tako Tako1g06474 Tako-Chr1:158853903 Tako4g03597 Tako-Chr4:79269904
5338925 Tako Tako2g05751 Tako-Chr2:134443337 Tako4g03597 Tako-Chr4:79269904
5341743 Tako Tako5g00221 Tako-Chr5:2516866 Tako4g03597 Tako-Chr4:79269904
5342118 Tako Tako5g02014 Tako-Chr5:71709757 Tako4g03597 Tako-Chr4:79269904
5349865 Tako Tako4g03597 Tako-Chr4:79269904 Tako7g04899 Tako-Chr7:111810947