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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tako4g03636 ATGGGTTCAGAACAATTCTTCGGCTACAGAACTACCGGTCAAACAACACCCTTCATCCCGATAAAACTCACCGAAACCCTAAAATTCGAATCGAGAAGCTCCCCAAAATCCCCATTTTTAACACCTTTCGATTCAGACACTTTCACCACATTAAGCGACAACAACAACAGCCCTTCTTCCCTCGAAGATTGCACCTCTTTCAACAACCATAGCGGCCCCACCACTCTTCACATGAAAAATGCTCTTCACGATATAGAAACCACCTTAATGGCCCCAGATGATGATGTCACCATGCCCACGGACCGACCCGGTCCCGACCCGGAACCCGAGTCGGGTCTAAACCGCTTGCTTATCGCGTGTGCGAGTGCTTTAGCGGGAAACAAACTAGATGAGTTTGAGAAATTAGTTGAAAAGGCGAGGGCATTTGTGTCAATTACTGGTGACCCGATTCAAAGACTCGGCGCGTATATAGTCGAAGGGTTGGTAGCGAGAAAGGAATGTTCCGGAAACAATATTTACAGGGCTTTGAAGTGTAAAGAACCCGAAGGTAAAGAGTTACTTTCGTATATGCATATTTTGTACGAAATTTGCCCGTATTTGAAATTCGGGTACATGGCTGCAAACGGCGCGATAGCTGAAGCGGTTAGAACCGAAGACCGAATCCATATAATCGACTTCCAAATAGCCCAAGGGACACAGTGGATAACCCTGTTACAAGCCCTGGCAGCCCGCCCAGGCGGGCCCCCACACGTGCGTATCACTGGGATCGACGATCCCGTTTCCAGATACGCGCGTGGCGACAGTCTGGAACTAGTCAGAAAACGACTAGCAGCAGTATCCGAAAAGTTCAAAATCCCAGTTGAGTTTCATCCGATCCAAGTATACGCCCCTTTCGTAACAAAAGAAATGTTAGACGTGAGGCCCGAAGAGGCACTCGCGGTAAATTTCGCGCTTCAACTGCACCACATGGCAGACGAGAGCGTTGACTTGTCAAACCCTAGAGACGGGCGGTTACGGATGGTGAAATCTTTGAACCCTAAAGTTGTTACGTTAGTCGAACAAGAATCGAATACGAATACTGCGGCGTTCTTTCCGAGGTTCTTGGAGGTTTTGGATTATTACACTGCGGTGTTTGAAAGTATGGATATAACGTTACCTAGAGACAAGAAACAGAGGATTAACGTTGAGCAGCATTGTTTGGCGAGAGATATTGTGAATGTAATCGCGTGTGAAGGGAAAGAGCGAGTTGAAAGACATGAGCTTTTTATGAAGTGGAGGTCGAGGTTTATGATGGCAGGGTTTACGCAGTGTCCGTTGAGTTCGTACGTGAATTCGGTTATAAAAAATCTTTTGAAGTGTTATTCGGAGAATTATATGTTGGTTGAGAAAGACGGAGCTATGTTGTTGGGTTGGAAAGAGAGAAATCTTATATCTGCGTCTGCTTGGCACTGA 1452 46.49 MGSEQFFGYRTTGQTTPFIPIKLTETLKFESRSSPKSPFLTPFDSDTFTTLSDNNNSPSSLEDCTSFNNHSGPTTLHMKNALHDIETTLMAPDDDVTMPTDRPGPDPEPESGLNRLLIACASALAGNKLDEFEKLVEKARAFVSITGDPIQRLGAYIVEGLVARKECSGNNIYRALKCKEPEGKELLSYMHILYEICPYLKFGYMAANGAIAEAVRTEDRIHIIDFQIAQGTQWITLLQALAARPGGPPHVRITGIDDPVSRYARGDSLELVRKRLAAVSEKFKIPVEFHPIQVYAPFVTKEMLDVRPEEALAVNFALQLHHMADESVDLSNPRDGRLRMVKSLNPKVVTLVEQESNTNTAAFFPRFLEVLDYYTAVFESMDITLPRDKKQRINVEQHCLARDIVNVIACEGKERVERHELFMKWRSRFMMAGFTQCPLSSYVNSVIKNLLKCYSENYMLVEKDGAMLLGWKERNLISASAWH 483
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tako4g03636 483 ProSiteProfiles GRAS family profile. 104 483 IPR005202 -
Tako4g03636 483 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 111 482 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Tako4g03636 483 Pfam GRAS domain family 114 482 IPR005202 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tako4g03636 K27748 scarecrow-like transcription factor PAT
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5311475 Tako Tako4g03619 Tako-Chr4:80407069 Tako4g03636 Tako-Chr4:80916218
5311491 Tako Tako4g03636 Tako-Chr4:80916218 Tako8g01761 Tako-Chr8:26267579
5341273 Tako Tako4g03636 Tako-Chr4:80916218 Tako4g04160 Tako-Chr4:93927159
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tako1g00252 . 22 653 GRAS Transcription Factor family AT1G63100 50.309 0.0 555.0
Tako1g00841 . 170 547 GRAS Transcription Factor family AT3G03450 28.316 4.15e-52 184.0
Tako1g00843 . 86 547 GRAS Transcription Factor family AT3G03450 29.435 4.37e-55 192.0
Tako1g00846 . 170 546 GRAS Transcription Factor family AT3G03450 27.72 6.77e-52 183.0
Tako1g00847 . 258 452 GRAS Transcription Factor family AT3G03450 32.487 1.81e-28 110.0
Tako1g01718 . 413 520 GRAS Transcription Factor family AT4G00150 48.148 6.31e-28 104.0
Tako1g01995 . 86 767 GRAS Transcription Factor family AT1G07530 44.606 0.0 549.0
Tako1g01996 . 86 767 GRAS Transcription Factor family AT1G07530 44.606 0.0 549.0
Tako1g03273 . 314 767 GRAS Transcription Factor family AT1G07530 51.429 1.49e-159 472.0
Tako1g03663 . 174 529 GRAS Transcription Factor family AT1G14920 54.749 3.31e-139 404.0
Tako1g04163 ACH 1 510 GRAS Transcription Factor family AT3G13840 47.5 9.03e-153 445.0
Tako1g04561 . 41 430 GRAS Transcription Factor family AT5G48150 60.75 9.57e-161 460.0
Tako1g04562 . 41 430 GRAS Transcription Factor family AT5G48150 60.75 9.57e-161 460.0
Tako1g04749 . 150 507 GRAS Transcription Factor family AT1G66350 30.319 9.70e-59 202.0
Tako1g04750 . 178 546 GRAS Transcription Factor family AT3G03450 29.765 9.40e-56 194.0
Tako1g04751 . 178 546 GRAS Transcription Factor family AT3G03450 28.721 1.04e-53 188.0
Tako1g05635 . 338 650 GRAS Transcription Factor family AT3G54220 56.013 3.93e-123 365.0
Tako1g06048 . 86 767 GRAS Transcription Factor family AT1G07530 46.579 0.0 573.0
Tako1g06503 . 73 713 GRAS Transcription Factor family AT2G37650 50.83 0.0 645.0
Tako1g06554 . 241 651 GRAS Transcription Factor family AT3G54220 80.482 0.0 661.0
Tako2g03576 . 4 482 GRAS Transcription Factor family AT1G50420 64.092 0.0 603.0
Tako2g04497 . 45 545 GRAS Transcription Factor family AT3G03450 66.27 0.0 670.0
Tako2g04796 . 309 355 GRAS Transcription Factor family AT3G54220 78.723 1.04e-18 80.5
Tako2g04924 ACH 37 486 GRAS Transcription Factor family AT4G36710 47.527 5.64e-126 374.0
Tako2g05044 ACH 133 531 GRAS Transcription Factor family AT4G37650 63.5 1.82e-180 510.0
Tako2g06624 . 86 454 GRAS Transcription Factor family AT1G07530 37.265 1.55e-45 166.0
Tako2g06625 . 86 454 GRAS Transcription Factor family AT1G07530 37.265 1.55e-45 166.0
Tako2g07184 . 29 640 GRAS Transcription Factor family AT5G52510 40.823 8.77e-127 384.0
Tako3g00007 . 176 544 GRAS Transcription Factor family AT3G03450 33.504 1.88e-57 197.0
Tako3g00562 . 24 478 GRAS Transcription Factor family AT1G50420 37.336 2.56e-103 313.0
Tako3g01282 ACH 37 486 GRAS Transcription Factor family AT4G36710 51.198 2.42e-139 408.0
Tako3g01295 . 160 370 GRAS Transcription Factor family AT5G41920 65.438 2.82e-90 271.0
Tako3g03147 ACH 14 510 GRAS Transcription Factor family AT3G13840 46.99 6.17e-150 438.0
Tako3g03736 . 167 529 GRAS Transcription Factor family AT1G14920 34.286 3.30e-69 230.0
Tako3g03927 . 129 414 GRAS Transcription Factor family AT4G00150 40.453 6.66e-52 184.0
Tako3g04198 . 1 250 GRAS Transcription Factor family AT3G49950 42.748 1.82e-64 206.0
Tako3g04306 . 413 520 GRAS Transcription Factor family AT4G00150 49.074 6.70e-29 107.0
Tako3g04443 . 1 525 GRAS Transcription Factor family AT4G17230 51.342 7.40e-180 515.0
Tako3g06033 . 43 530 GRAS Transcription Factor family AT1G14920 68.154 0.0 673.0
Tako3g06178 . 2 405 GRAS Transcription Factor family AT5G41920 65.721 0.0 531.0
Tako4g00957 . 391 766 GRAS Transcription Factor family AT1G07530 47.34 9.05e-126 377.0
Tako4g00958 . 319 767 GRAS Transcription Factor family AT1G07530 46.507 1.14e-138 419.0
Tako4g01477 . 154 445 GRAS Transcription Factor family AT1G55580 26.899 2.83e-20 90.1
Tako4g03204 . 188 444 GRAS Transcription Factor family AT1G55580 56.154 3.04e-96 287.0
Tako4g03340 . 65 490 GRAS Transcription Factor family AT5G48150 64.651 0.0 578.0
Tako4g03341 . 65 490 GRAS Transcription Factor family AT5G48150 64.651 0.0 578.0
Tako4g03619 . 212 489 GRAS Transcription Factor family AT5G48150 65.827 5.41e-135 388.0
Tako4g03636 . 70 489 GRAS Transcription Factor family AT5G48150 59.524 2.02e-177 505.0
Tako4g04160 . 34 490 GRAS Transcription Factor family AT5G48150 60.56 0.0 555.0
Tako4g05522 . 426 536 GRAS Transcription Factor family AT3G60630 46.018 1.98e-19 83.6
Tako5g00472 . 208 584 GRAS Transcription Factor family AT5G66770 28.643 1.99e-22 99.0
Tako5g01296 . 159 409 GRAS Transcription Factor family AT1G50420 61.905 1.58e-100 299.0
Tako5g02505 . 103 153 GRAS Transcription Factor family AT5G48150 41.176 6.54e-08 48.9
Tako5g02642 . 258 531 GRAS Transcription Factor family AT2G01570 66.319 4.51e-128 378.0
Tako5g03181 . 465 630 GRAS Transcription Factor family AT5G52510 60.465 8.71e-64 206.0
Tako6g01672 . 26 530 GRAS Transcription Factor family AT1G14920 57.39 0.0 584.0
Tako6g02271 . 1 578 GRAS Transcription Factor family AT5G66770 56.876 0.0 568.0
Tako6g02295 ACH 37 486 GRAS Transcription Factor family AT4G36710 51.522 4.58e-144 421.0
Tako6g02434 ACH 1 530 GRAS Transcription Factor family AT4G37650 56.877 0.0 559.0
Tako6g02458 . 12 409 GRAS Transcription Factor family AT3G49950 55.981 2.95e-159 453.0
Tako7g00260 ACH 87 555 GRAS Transcription Factor family AT4G00150 52.216 1.17e-160 470.0
Tako7g04667 . 150 506 GRAS Transcription Factor family AT1G66350 35.185 3.64e-73 240.0
Tako7g04826 . 193 481 GRAS Transcription Factor family AT1G50600 62.284 5.44e-129 377.0
Tako7g04827 . 193 481 GRAS Transcription Factor family AT1G50600 62.284 5.44e-129 377.0
Tako8g00651 . 86 767 GRAS Transcription Factor family AT1G07530 46.377 0.0 561.0
Tako8g00988 . 73 603 GRAS Transcription Factor family AT2G37650 50.929 4.17e-172 502.0
Tako8g01090 . 2 405 GRAS Transcription Factor family AT5G41920 65.721 0.0 533.0
Tako8g01761 . 18 593 GRAS Transcription Factor family AT1G21450 55.461 0.0 595.0
Tako8g01762 . 18 593 GRAS Transcription Factor family AT1G21450 55.461 0.0 595.0
Tako8g01886 . 177 545 GRAS Transcription Factor family AT3G03450 33.842 7.61e-55 189.0
Tako8g01887 . 154 519 GRAS Transcription Factor family AT5G17490 35.661 2.00e-53 186.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Tako GRAS 4.4e-128 CL0063 TF GRAS