AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tako4g04002 ATGGTTTCTTCTTCCACTTCTACTTCTACTACTACTACTTGGACTAATCCCAGAAACAAATTTGTGTCTTCTTCAAAAGATGTACTGGGTTCATCTTCTTCCTCGATTTCTTTCTGTAAAAAACCCAATGCTCGAACTGCGCAGAATTCGATTCGTTGTGCACTTCATACACCTTCGATTCTCCAGTTTCCTAAACAGTCTGTTGGTAAAAGCAATTCGAAGTCTTCTTCTACGGCGGTCCAACAAAATTGGAACTTGTTACAGAAAGTTGCAGCAATGGCATTGGACGCCGTAGAAGACGGATTGAAAGCTAGAGAGAAGTTACACGCTTTGCCGAAAACAGCGGACCCAAATGTTCAAATTGCCGGAAATTTCAGTCCAGTACCAGAACAGCCTGTGCGCCACTGTCTACCGGTTAGCGGGAAGATCCCGGAACATATTCAAGGAGTTTATTTGAGGAATGGAGCTAACCCGTTGTTCGAGCCTACCTCCGGCCACCATTTGTTTGACGGAGATGGTATGATTTACGCTGTGAAGTTCGATAACGGCTCAGCTAGCTACGCTTGCCGTTTTACAGAGACGCAGAGGCTTGTTCAGGAACGTGCTATCGGAAAACCGGTGTTTCCGAAAGCTATCGGTGAACTCCATGGTCATTCTGGCATCGCTAAGCTTTTACTGTTTTACGCTCGTGGGTTGTGTGGTTTGATTGACGTCACTAAAGGGCTTGGGGTGGCGAACGCCGGTTTGGTTTACTTTAACAACCGGCTTTTGGCCATGTCGGAGGATGATTTGCCGTATCACGTGCGTGTAACGCCTTCCGGCGACTTGAAAACTGGCGGACGGTACAATTTCGACGAGCAGTTGAAGTCTACCATGATCGCACACCCAAAACTCGACCCAGTTTCAGGCGAGCTTTTCGCACTGAGCTACGATGTTATTCAGAAGCCTTACCTCAAATACTTCTGGTTTTCACCGGATGGCAAGAAATCAAAAGACGTTGCGATTGATTTGGGAAAGCCGACTATGGTTCATGATTTCGCAATCACGGAGAATTTCGTGGTGGTGCCGGACCACCAGGTGGTTTTCAAGATGTCAGAGATGATCACTGGTGGGTCACCGGTGGTGTACGACAAAGAGAAGGTTTCACGTTTTGGCGTTCTCGATAAATACGCAGAAAATGGGTCGGATATCAAATGGGTGGAAGTTCCGGATTGTTTCTGTTTTCATCTCTGGAACGCGTGGGAAGAACCAGAATCCGACGAGGTCGTCGTGATCGGCTCCTGCATGACTCCGGCCGACTCCATTTTCAACGAATGTAACGAAGAACTCAAAAGCGTGTTATCCGAAATCCGTCTTAATCTAAAAACCGGCAAATCCACTCGTCGACCCATAATCTCTCCCGAAAATGACGTCAATTTGGAAGCAGGGATGGTGAACAAAAACCTCCTCGGCCGGAAAGCCAAATACGCCTACCTCGCCATCGCCGAGCCATGGCCAAAGGTCTCTGGTTTTGCCAAAGTCGATCTTTCCACCGGAGAGACCCAGAAATTCATCTACGGAGATCAAAAATACGGCGGCGAGCCTCTGTTTCTTCCCAGAGACCCCAATTCCGAAACCGAAGACGACGGCCACATCTTGGCCTTCGTTCACGACGAGAAAACATGGAACTCCGAGCTCCAAATTGTGAATGCAATGACGATGAAACTAGAGGCGACGGTTAAGCTGCCATCGAGGGTTCCATATGGTTTCCATGGAACCTTCATAAATGCCAAAGATTTGGCAACGCAAGCTTGA 1794 47.83 MVSSSTSTSTTTTWTNPRNKFVSSSKDVLGSSSSSISFCKKPNARTAQNSIRCALHTPSILQFPKQSVGKSNSKSSSTAVQQNWNLLQKVAAMALDAVEDGLKAREKLHALPKTADPNVQIAGNFSPVPEQPVRHCLPVSGKIPEHIQGVYLRNGANPLFEPTSGHHLFDGDGMIYAVKFDNGSASYACRFTETQRLVQERAIGKPVFPKAIGELHGHSGIAKLLLFYARGLCGLIDVTKGLGVANAGLVYFNNRLLAMSEDDLPYHVRVTPSGDLKTGGRYNFDEQLKSTMIAHPKLDPVSGELFALSYDVIQKPYLKYFWFSPDGKKSKDVAIDLGKPTMVHDFAITENFVVVPDHQVVFKMSEMITGGSPVVYDKEKVSRFGVLDKYAENGSDIKWVEVPDCFCFHLWNAWEEPESDEVVVIGSCMTPADSIFNECNEELKSVLSEIRLNLKTGKSTRRPIISPENDVNLEAGMVNKNLLGRKAKYAYLAIAEPWPKVSGFAKVDLSTGETQKFIYGDQKYGGEPLFLPRDPNSETEDDGHILAFVHDEKTWNSELQIVNAMTMKLEATVKLPSRVPYGFHGTFINAKDLATQA 597
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tako4g04002 597 Pfam Retinal pigment epithelial membrane protein 129 588 IPR004294 GO:0016702(InterPro)
Tako4g04002 597 MobiDBLite consensus disorder prediction 1 39 - -
Tako4g04002 597 PANTHER BETA-CAROTENE DIOXYGENASE 109 589 IPR004294 GO:0009570(PANTHER)|GO:0010436(PANTHER)|GO:0016121(PANTHER)|GO:0016702(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tako4g04002 K09840 9-cis-epoxycarotenoid dioxygenase [EC:1.13.11.51]