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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tako4g04102 ATGGTAGTAAACTTGGAAAATTTATCAAAGGTTAAAAGAAATGATGTTAATCACATTGATATGCTAAATGTAAGTTATGATAATTATGATGGAGTTATTGTGGAAGTTAAAGAGAATATGGATGAAAATATATTTACTAGTCTACTTCAAACATCAATAACTCAATGGAGGCACCAGGGAAAAAAGGGAGTTTGGCTTAAATTGTCTCTTGAGCTTTCAAATCTTGTTAATCCTGCAGTAAAGGAAGGATTTTGGTACCATCATGCGGAACCAACGTACTTGATGTTGGTGTATTGGATTCCTAAAACTAAACATACTTTTCCATCAAATGCTTCACATCGAGTTGGTGTTGCTTCTTTTGTCTTGAACTCCAAAGGAGAGATTCTTGTAGTGCAAGAGGGAAATGGAGTGTTCAAAGGCACAGGGGTTTGGAAATTACCAACGGGTAGTGTTGAAGAGGGTGAAGATATAGGCACAGCCGCAATCAGGGAAGTGAAAGAAGAAGCTGGAATCGATACAGAATTTGTGGAAGTACTTGCATTCAGGCAAAGTCACATGTCGTTTTTTACCAAATCGGATATAATGTTTGTGTGTATGCTAAAACCAACATCATTTGATGTTGAAAAACAAGAGTCTGAGATCGAAGGAGCAAAGTGGATGCCTGTTGAAGAATACGCCAATCAGCCATTTGTAAAGAATCATAAATCCTTTGAGTATATAGCTAAAATATGTGTAGAAAAGAAAGATGACAAGTATGTCGGATTTACTGCATTGTCTACAAAATCTGAAACATCTGTCGCTGACAGCTATTTGTATTCCCATCATCACAAGGAGTCGTAA 840 36.67 MVVNLENLSKVKRNDVNHIDMLNVSYDNYDGVIVEVKENMDENIFTSLLQTSITQWRHQGKKGVWLKLSLELSNLVNPAVKEGFWYHHAEPTYLMLVYWIPKTKHTFPSNASHRVGVASFVLNSKGEILVVQEGNGVFKGTGVWKLPTGSVEEGEDIGTAAIREVKEEAGIDTEFVEVLAFRQSHMSFFTKSDIMFVCMLKPTSFDVEKQESEIEGAKWMPVEEYANQPFVKNHKSFEYIAKICVEKKDDKYVGFTALSTKSETSVADSYLYSHHHKES 279
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tako4g04102 279 SUPERFAMILY Nudix 80 241 IPR015797 -
Tako4g04102 279 ProSitePatterns Nudix box signature. 149 170 IPR020084 GO:0016787(InterPro)
Tako4g04102 279 Pfam NUDIX domain 113 236 IPR000086 -
Tako4g04102 279 Gene3D - 19 104 - -
Tako4g04102 279 ProSiteProfiles Nudix hydrolase domain profile. 112 244 IPR000086 -
Tako4g04102 279 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 110 128 IPR003293 -
Tako4g04102 279 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 72 90 IPR003293 -
Tako4g04102 279 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 198 222 IPR003293 -
Tako4g04102 279 Pfam Nudix hydrolase domain 22 100 IPR040618 -
Tako4g04102 279 PRINTS NUDIX hydrolase family signature 158 173 IPR020476 -
Tako4g04102 279 PRINTS NUDIX hydrolase family signature 144 158 IPR020476 -
Tako4g04102 279 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 114 253 - -
Tako4g04102 279 PANTHER NUDIX HYDROLASE RELATED 10 276 IPR003293 GO:0035529(PANTHER)|GO:0047631(PANTHER)|GO:0051287(PANTHER)
Tako4g04102 279 FunFam Nudix hydrolase 8 114 252 - -
Tako4g04102 279 FunFam nudix hydrolase 2 19 105 - -
Tako4g04102 279 CDD Nudix-Hydrolase-12 113 244 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tako4g04102 K26956 ADP-ribose/NAD+ diphosphatase [EC:3.6.1.13 3.6.1.22]