AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tako4g04117 | ATGTCATCAAGATCGACTAGCAGGACCCATTGTTCCAGGAGCAGTTCATCAAGATTGAAACGCGATGCTCGAGTGATCTCACAAACCCCAATTGACGCAAAGCTTCATGGAGATTTCGAAGACTCCGAACGACAATTTGACTACTCTACTTCCGTCGACGTCAACGCATCAACGTCAACCAGCAATGTCCCGTCATCGACTGTATCAGCGTACCTTCAAAAAATGCAAAGAGGAACTCTAATCCAGCCTTTCGGTTGCATGATTGCGATCGATGAACAAACGTTAACCGTATTAGCTTACAGCGAAAATGCTCTCGAGATGTTGGATTTAGCCCCACATGCAGTTCCGAACATCGAACAACAAGAAGCTTTGACTTTCGGAACCGACGTCCGTACTCTCTTCAGATCTTCAAGCGCATCCGCTCTTCAAAAAGCGGTGAACTTCCCAGAAATTAATCTCCTAAATCCGATTTTAGTTCATTGCCGGAGTTCAGGTAAGCCGTTTTACGCAATTTTACACAGAAACGACGTGGGATTGATCATCGATTTGGAGCCTGTGAATCCCGCCGACGTCCCTGTAACAGCTGCCGGCGCTTTAAAATCCTATAAGCTTGCCGCTAAAGCGATTTCAAGGTTACAATCTTTACAAAGTGGGAACATAACTCGCATGTGTGATGTCCTGGTGCGTGAAGTGAGTGAGTTGACTGGGTATGACCGAGTCATGGTGTATAAATTTCATGAAGACGAACATGGTGAAGTTATTGCAGAATGTCGAAAACCTGATCTTGAACCTTATCTAGGGTTACATTACCCTGCTACTGACATCCCTCAAGCTTCAAGATTTCTTTTTATGAAAAATAAAGTTCGAATGATTTGTGATTGTTTGGCACAATCCGTGAAGGTGATTCAAACCAAGAATTTACCTCAACCCTTGAGTCTTGCGGGGTCCGCTTTAAGAGCGCCACATGGATGCCACTCACAGTACATGGCTAACATGGGGTCAATAGCATCTCTTGTAATGTCGGTCACCATCAATGATGGTGATGATGATGATGATGACATGGATGATGAAAACGAATCCGAAAGCGCGATAAACCAACAAAAAAAAGAAAAAGGAAAAAGATTATGGGGTTTAGTTGTTTGCCATCATTCAACTGCTCGATTCGTTCCGTTTCCTTTGAGGTATGCGTGCGAGTTTTTGATTCAAGTTTTCGGTGTTCAAATCAACAAGGAAGTCGAATTATCCGCTCAATTACAAGAAAAACACATCTTGAAAACACAAACCGTACTTTGTGATATGCTTTTGCGGGAAGCGCCAATTGGAATCATGACACAATCGCCAAATGTAATGGATCTTGTTACATGTGATGGTGCGGCTCTTTACTACAAAAACAAGTTTTGGTTACTTGGAATCACTCCAAAAGAATCACAAATTAAAGACATAGCAAATTGGCTTCTTCAAGAACATGAAGGTGGGACAGGGTTAAGTACCGATAGTCTCATGGATGCAGGGTATCCGAATGCTTTGGTTTTAGGGCAAGCGGTTTGTGGAATGGCCGCTATTAAAATCACTTCAAAAGATTTTCTTTTTTGGTTTCGATCACATACTGCAAAAGAAGTGAAATGGGGTGGTGCAAAACATGATCCGGATGATAAAGATGATGGAAGAAAGATGCATCCAAGGTCATCATTCAAGGCGTTTTTGGAAGTGGTCAAGAACCGCAGTTCACCATGGGAAGATGTGGAAATGGATGCCATTCATTCTTTGCAGTTGATTTTGAGAGGATCTTTACAAGATGATGGTGAACAAAAGGACACGGGTGATAATGATGAGGATGATGATGATAAGAAGATTGTGAGTGTTCCAACTGTTGGATCGAGCATAGAAAGAGTTGATGAAATGCGTGTTGTGGCTAATGAAATGGTTAGGTTGATTGAAACTGCTTCGGTCCCTATATTTTCGGTTGATGGGAATGGAAATATTAGCGGGTGGAATGATAAAATAGCCGAAATTACCGGATTGCCATTAGATCAAGCGGTTGGTGTCCCATTGGTCGATTTAGTTGTCGGTGATTCGATTGATGAGGTCAAAGTCATGCTTTCATCTGCCTTACAAGGCATCGAGGAGAAAAATCTTGAAATCAACCTAAAATGTTTCGGTAGTCGAGAACAAAATGACCATATTACCCTTGTGACAAACGCGTGTTGTAGCCGTAATTTGAATGAAGCGATCGTGGCGGTATGCTTTGTAGGACAAGATCTAACCACTCAAAAGCTAATCACGGACAAATACACAAAAATGAAAGGCGATTATTCGAGTATTATCCGTAGCCCATGTCCACTTATTCCACCAATTTTCATGATGGACGAATCCGGTAAATGCAAAGAATGGAACGATGCAATGCAAAAAATCACGGGGTTAAAAAGGGAAGAAGCATACAATCGTATTCTTCTCGGTGAAGTTTTCACCATTGGTAGTTTCGGGTGTCGGGTCAAAGGCGAAGATACTTTGACCCGACTCAGAATACTGCTAAACGAGGTGATTTCGGGGTTGGATGCGGATAAATTGTTGTTCGGGTTTTTTGATCAAAACAATAAGTATATCGAGGCGTTACTTTCGGCCAACAAAAGGGTCGATAAAGATGGAAAAATTACCGGGGTTTTAGGGTTTTTACATGTAACGAGCCCCGAGCTTCAACATGCCATGATGGTGCAAAGAAGGTCCACACAAGCTGCTTTGAATAGTCTTACCAAGGTGACTTACTTGCGCCATGAACTCAAGAGCGGTTTAAGCGGGTTCAAATTTATTGAAGATTTAATGGAATCATCAGAGTTGGGTAGAGAGCAGAGACATATTTTGCGTAAAAGCTACTTGTGTCGAGAACAATTAGCACAAATTGTCGATGACGTGGATATCGAAAGCATCGAGCAATGTTATACGGAGGTGAAATGTGCGGAGTTTAAACTTGGCGAGTCTTTAGAGGTGGTTTTGAACCAAATCACGAGTTTGGGCCGTGAGCGGAACGTGGAGGTGGTGTATGATGCACCCGATCAAGTGTTGGCTTTGAATGTATTCGGTGATAATTTAAGACTCCAACAAGTCCTTGCGGATTTTTTGTCAAATGCCGTAAATTTCACGCCTACATTTGAAGGATCTTCGGTTGTGTTTCATGTGAGTCACAAGATAGAACACATTGGAGCCAAGATTCAAGTTGCCCATCTTGAATTCAGGATTACCCATCCGGCACCAGGGATCCCAGAGAAGTTGATTCAAGATATGTTTCACCATAACCGAAGTGTGTCAAGAGAAGGGCTTGGACTATACATCAGCCAAAAGCTCGTTAAAATCATGAATGGAAGTGTGCAGTATCTTAGGGAAGCTGAAAAAGCTTCTTTCATAGTTTTGATCGAGTTTCCAATTGCACCTTCATTGACATCTGACAACAAACGGTCCAAAAAAATCTTGTAA | 3468 | 42.19 | MSSRSTSRTHCSRSSSSRLKRDARVISQTPIDAKLHGDFEDSERQFDYSTSVDVNASTSTSNVPSSTVSAYLQKMQRGTLIQPFGCMIAIDEQTLTVLAYSENALEMLDLAPHAVPNIEQQEALTFGTDVRTLFRSSSASALQKAVNFPEINLLNPILVHCRSSGKPFYAILHRNDVGLIIDLEPVNPADVPVTAAGALKSYKLAAKAISRLQSLQSGNITRMCDVLVREVSELTGYDRVMVYKFHEDEHGEVIAECRKPDLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCLAQSVKVIQTKNLPQPLSLAGSALRAPHGCHSQYMANMGSIASLVMSVTINDGDDDDDDMDDENESESAINQQKKEKGKRLWGLVVCHHSTARFVPFPLRYACEFLIQVFGVQINKEVELSAQLQEKHILKTQTVLCDMLLREAPIGIMTQSPNVMDLVTCDGAALYYKNKFWLLGITPKESQIKDIANWLLQEHEGGTGLSTDSLMDAGYPNALVLGQAVCGMAAIKITSKDFLFWFRSHTAKEVKWGGAKHDPDDKDDGRKMHPRSSFKAFLEVVKNRSSPWEDVEMDAIHSLQLILRGSLQDDGEQKDTGDNDEDDDDKKIVSVPTVGSSIERVDEMRVVANEMVRLIETASVPIFSVDGNGNISGWNDKIAEITGLPLDQAVGVPLVDLVVGDSIDEVKVMLSSALQGIEEKNLEINLKCFGSREQNDHITLVTNACCSRNLNEAIVAVCFVGQDLTTQKLITDKYTKMKGDYSSIIRSPCPLIPPIFMMDESGKCKEWNDAMQKITGLKREEAYNRILLGEVFTIGSFGCRVKGEDTLTRLRILLNEVISGLDADKLLFGFFDQNNKYIEALLSANKRVDKDGKITGVLGFLHVTSPELQHAMMVQRRSTQAALNSLTKVTYLRHELKSGLSGFKFIEDLMESSELGREQRHILRKSYLCREQLAQIVDDVDIESIEQCYTEVKCAEFKLGESLEVVLNQITSLGRERNVEVVYDAPDQVLALNVFGDNLRLQQVLADFLSNAVNFTPTFEGSSVVFHVSHKIEHIGAKIQVAHLEFRITHPAPGIPEKLIQDMFHHNRSVSREGLGLYISQKLVKIMNGSVQYLREAEKASFIVLIEFPIAPSLTSDNKRSKKIL | 1155 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tako4g04117 | 1155 | CDD | PAS | 781 | 892 | IPR000014 | - | |
| Tako4g04117 | 1155 | Gene3D | PAS domain | 78 | 322 | - | - | |
| Tako4g04117 | 1155 | Gene3D | - | 959 | 1134 | IPR036890 | - | |
| Tako4g04117 | 1155 | SUPERFAMILY | ATPase domain of HSP90 chaperone-DNA topoisomerase II-histidine kinase | 988 | 1139 | IPR036890 | - | |
| Tako4g04117 | 1155 | CDD | HATPase-Phy-like | 1025 | 1138 | IPR044767 | - | |
| Tako4g04117 | 1155 | Pfam | PAS fold | 640 | 753 | IPR013767 | GO:0006355(InterPro) | |
| Tako4g04117 | 1155 | Pfam | PAS fold | 770 | 892 | IPR013767 | GO:0006355(InterPro) | |
| Tako4g04117 | 1155 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 644 | 750 | IPR035965 | - | |
| Tako4g04117 | 1155 | SUPERFAMILY | GAF domain-like | 420 | 598 | - | - | |
| Tako4g04117 | 1155 | Gene3D | - | 200 | 573 | IPR029016 | - | |
| Tako4g04117 | 1155 | Gene3D | PAS domain | 628 | 768 | - | - | |
| Tako4g04117 | 1155 | ProSiteProfiles | PAS repeat profile. | 637 | 707 | IPR000014 | - | |
| Tako4g04117 | 1155 | NCBIfam | PAS domain S-box protein | 644 | 709 | IPR000014 | - | |
| Tako4g04117 | 1155 | PIRSF | Phytochrome-conventional | 2 | 1149 | IPR012129 | GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro) | |
| Tako4g04117 | 1155 | PRINTS | Phytochrome signature | 732 | 749 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Tako4g04117 | 1155 | PRINTS | Phytochrome signature | 640 | 656 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Tako4g04117 | 1155 | PRINTS | Phytochrome signature | 319 | 340 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Tako4g04117 | 1155 | PRINTS | Phytochrome signature | 560 | 578 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Tako4g04117 | 1155 | PRINTS | Phytochrome signature | 442 | 462 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Tako4g04117 | 1155 | PRINTS | Phytochrome signature | 527 | 546 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Tako4g04117 | 1155 | PRINTS | Phytochrome signature | 659 | 674 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Tako4g04117 | 1155 | PRINTS | Phytochrome signature | 752 | 772 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Tako4g04117 | 1155 | PRINTS | Phytochrome signature | 134 | 156 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Tako4g04117 | 1155 | PRINTS | Phytochrome signature | 234 | 253 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Tako4g04117 | 1155 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 784 | 889 | IPR035965 | - | |
| Tako4g04117 | 1155 | MobiDBLite | consensus disorder prediction | 346 | 360 | - | - | |
| Tako4g04117 | 1155 | Pfam | Phytochrome region | 425 | 599 | IPR013515 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Tako4g04117 | 1155 | SMART | gaf-1 | 219 | 422 | IPR003018 | GO:0005515(InterPro) | |
| Tako4g04117 | 1155 | MobiDBLite | consensus disorder prediction | 346 | 368 | - | - | |
| Tako4g04117 | 1155 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 75 | 188 | IPR035965 | - | |
| Tako4g04117 | 1155 | Gene3D | - | 417 | 590 | IPR043150 | - | |
| Tako4g04117 | 1155 | ProSiteProfiles | PAS repeat profile. | 767 | 822 | IPR000014 | - | |
| Tako4g04117 | 1155 | FunFam | Phytochrome | 417 | 548 | - | - | |
| Tako4g04117 | 1155 | SMART | pas-2 | 769 | 839 | IPR000014 | - | |
| Tako4g04117 | 1155 | SMART | pas-2 | 639 | 705 | IPR000014 | - | |
| Tako4g04117 | 1155 | SUPERFAMILY | GAF domain-like | 199 | 409 | - | - | |
| Tako4g04117 | 1155 | ProSitePatterns | Phytochrome chromophore attachment site signature. | 319 | 328 | IPR013516 | - | |
| Tako4g04117 | 1155 | PANTHER | OS08G0260000 PROTEIN | 1 | 1014 | - | - | |
| Tako4g04117 | 1155 | Pfam | PAS fold | 70 | 186 | IPR013654 | GO:0006355(InterPro) | |
| Tako4g04117 | 1155 | ProSiteProfiles | Phytochrome chromophore attachment site domain profile. | 219 | 402 | IPR016132 | - | |
| Tako4g04117 | 1155 | SMART | HKATPase-4 | 1026 | 1142 | IPR003594 | - | |
| Tako4g04117 | 1155 | Gene3D | PAS domain | 783 | 898 | - | - | |
| Tako4g04117 | 1155 | FunFam | Phytochrome | 979 | 1140 | - | - | |
| Tako4g04117 | 1155 | Pfam | GAF domain | 221 | 411 | IPR003018 | GO:0005515(InterPro) | |
| Tako4g04117 | 1155 | CDD | PAS | 648 | 714 | IPR000014 | - | |
| Tako4g04117 | 1155 | ProSiteProfiles | Histidine kinase domain profile. | 921 | 1142 | IPR005467 | - | |
| Tako4g04117 | 1155 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Tako4g04117 | 1155 | Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 1026 | 1136 | IPR003594 | - | |
| Tako4g04117 | 1155 | MobiDBLite | consensus disorder prediction | 597 | 618 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tako4g04117 | - | - |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Tako1g00821 | ACH | 323 | 697 | Histidine Kinase gene family | AT2G18790 | 73.6 | 0.0 | 572.0 | |
| Tako1g00826 | ACH | 39 | 1150 | Histidine Kinase gene family | AT2G18790 | 73.345 | 0.0 | 1729.0 | |
| Tako2g01190 | . | 106 | 317 | Histidine Kinase gene family | AT2G01830 | 75.0 | 5.63e-109 | 335.0 | |
| Tako2g01191 | . | 106 | 547 | Histidine Kinase gene family | AT2G01830 | 73.529 | 0.0 | 668.0 | |
| Tako2g01192 | . | 106 | 1049 | Histidine Kinase gene family | AT2G01830 | 66.841 | 0.0 | 1261.0 | |
| Tako2g01193 | . | 106 | 1049 | Histidine Kinase gene family | AT2G01830 | 66.213 | 0.0 | 1241.0 | |
| Tako2g01194 | . | 208 | 1049 | Histidine Kinase gene family | AT2G01830 | 64.988 | 0.0 | 1077.0 | |
| Tako2g01196 | . | 106 | 1049 | Histidine Kinase gene family | AT2G01830 | 66.841 | 0.0 | 1261.0 | |
| Tako2g01195 | . | 106 | 1049 | Histidine Kinase gene family | AT2G01830 | 66.213 | 0.0 | 1241.0 | |
| Tako2g04790 | ACH | 739 | 1197 | Histidine Kinase gene family | AT2G17820 | 49.353 | 3.43e-128 | 396.0 | |
| Tako2g04791 | ACH | 27 | 1197 | Histidine Kinase gene family | AT2G17820 | 62.806 | 0.0 | 1460.0 | |
| Tako4g04117 | . | 3 | 1110 | Histidine Kinase gene family | AT5G35840 | 59.119 | 0.0 | 1438.0 | |
| Tako4g05404 | . | 1 | 1120 | Histidine Kinase gene family | AT1G09570 | 74.755 | 0.0 | 1794.0 | |
| Tako4g05405 | . | 1 | 1120 | Histidine Kinase gene family | AT1G09570 | 74.755 | 0.0 | 1794.0 | |
| Tako5g01249 | . | 5 | 136 | Histidine Kinase gene family | AT4G18130 | 50.746 | 1.22e-28 | 120.0 | |
| Tako6g00780 | ACH | 1 | 921 | Histidine Kinase gene family | AT5G10720 | 58.307 | 0.0 | 1050.0 | |
| Tako6g02136 | . | 166 | 928 | Histidine Kinase gene family | AT2G17820 | 64.812 | 0.0 | 1037.0 | |
| Tako6g02137 | . | 28 | 928 | Histidine Kinase gene family | AT2G17820 | 60.549 | 0.0 | 1111.0 | |
| Tako6g02138 | . | 28 | 928 | Histidine Kinase gene family | AT2G17820 | 63.337 | 0.0 | 1180.0 | |
| Tako6g02139 | . | 28 | 605 | Histidine Kinase gene family | AT2G17820 | 67.462 | 0.0 | 809.0 | |
| Tako6g02140 | ACH | 166 | 928 | Histidine Kinase gene family | AT2G17820 | 64.812 | 0.0 | 1037.0 | |
| Tako6g02141 | ACH | 166 | 607 | Histidine Kinase gene family | AT2G17820 | 71.175 | 0.0 | 666.0 | |
| Tako7g01248 | . | 780 | 1052 | Histidine Kinase gene family | AT4G18130 | 47.985 | 3.55e-82 | 267.0 | |
| Tako7g02762 | . | 1 | 649 | Histidine Kinase gene family | AT5G10720 | 61.492 | 0.0 | 791.0 | |
| Tako7g02763 | . | 5 | 921 | Histidine Kinase gene family | AT5G10720 | 59.013 | 0.0 | 1053.0 | |
| Tako7g02777 | ACH | 5 | 921 | Histidine Kinase gene family | AT5G10720 | 58.906 | 0.0 | 1050.0 | |
| Tako8g03110 | ACH | 47 | 1153 | Histidine Kinase gene family | AT2G18790 | 76.958 | 0.0 | 1810.0 | |
| Tako8g03730 | ACH | 3 | 1109 | Histidine Kinase gene family | AT2G47430 | 35.083 | 0.0 | 612.0 |