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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tako4g04290 ATGAAACTAGACCAGGAACTCAACCAGCATGGCCGTGACATCATCAGAACAATCGAAGTAGTTCAATCCGTTAAGAAGCTATCAACTACAGCCGTTGATAACTTCGATTCGAATGGGGAAGAGCTCTACACGCCTCCGCTTAATTTCTCCATGGTTGATAATGGCATATACCGTTCAGGATTCCCCGATACCTCCAACTTCTCGTTTCTCAAAACCCTAGGCCTTCGCTCTATCGTATATTTGTGTCCTGAACCATATCCGGAGCATAACATGGAATTTCTGAAGGCTGATCGGATTCAATTATTTCAATTCGGGATTGAAGGCACTAAGGAACCTTTCGTAAATATACCAGAGGACACAATTCGAGAAGCACTAAAAGTTGTTCTAGATGTAAGAAACCACCCATTATTGATCCATTGCAAAAGAGGCAAGCATCGAACTGGTTGTTTAGTTGGATGCTTGAGAAAAATCCAGAGATGGTGTTTGACGTCTATTTTTGATGAGTACCAAAGGTTTGCAGCTGGTAAGGCTAGAATTTCTGATCAGAGATTTATTGAGCTTTTTGATACTTCTGGATTTAAGGATATTCCACCATGTCCATGTTCGTGTTCTAAGAGGAGGTAA 624 41.35 MKLDQELNQHGRDIIRTIEVVQSVKKLSTTAVDNFDSNGEELYTPPLNFSMVDNGIYRSGFPDTSNFSFLKTLGLRSIVYLCPEPYPEHNMEFLKADRIQLFQFGIEGTKEPFVNIPEDTIREALKVVLDVRNHPLLIHCKRGKHRTGCLVGCLRKIQRWCLTSIFDEYQRFAAGKARISDQRFIELFDTSGFKDIPPCPCSCSKRR 207
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tako4g04290 207 Gene3D Protein tyrosine phosphatase superfamily 43 192 IPR029021 -
Tako4g04290 207 ProSiteProfiles Dual specificity protein phosphatase domain profile. 48 199 IPR020422 GO:0006470(InterPro)
Tako4g04290 207 PANTHER TYROSINE-PROTEIN PHOSPHATASE 38 197 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Tako4g04290 207 FunFam probable tyrosine-protein phosphatase At1g05000 42 192 - -
Tako4g04290 207 CDD PFA-DSP-Siw14 42 189 - -
Tako4g04290 207 ProSitePatterns Tyrosine specific protein phosphatases active site. 138 148 IPR016130 GO:0016311(InterPro)
Tako4g04290 207 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 43 189 IPR029021 -
Tako4g04290 207 PRINTS Plant and fungal dual specificity phosphatase signature 116 130 IPR020428 GO:0016791(InterPro)
Tako4g04290 207 PRINTS Plant and fungal dual specificity phosphatase signature 43 60 IPR020428 GO:0016791(InterPro)
Tako4g04290 207 PRINTS Plant and fungal dual specificity phosphatase signature 99 113 IPR020428 GO:0016791(InterPro)
Tako4g04290 207 PRINTS Plant and fungal dual specificity phosphatase signature 80 93 IPR020428 GO:0016791(InterPro)
Tako4g04290 207 Pfam Tyrosine phosphatase family 45 195 IPR004861 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tako4g04290 K18045 tyrosine-protein phosphatase SIW14 [EC:3.1.3.48]
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tako1g02100 . 76 159 Protein tyrosine phosphatase (PTP) family AT3G01510 30.952 7.11e-08 52.0
Tako1g02101 . 76 159 Protein tyrosine phosphatase (PTP) family AT3G01510 30.952 7.11e-08 52.0
Tako1g03170 . 21 189 Protein tyrosine phosphatase (PTP) family AT3G23610 62.722 2.55e-74 219.0
Tako1g04536 . 1 257 Protein tyrosine phosphatase (PTP) family AT2G04550 59.41 1.22e-106 308.0
Tako1g06432 . 67 187 Protein tyrosine phosphatase (PTP) family AT3G23610 38.017 1.29e-18 81.6
Tako1g06441 . 36 335 Protein tyrosine phosphatase (PTP) family AT1G71860 64.918 1.35e-146 416.0
Tako1g06442 . 36 337 Protein tyrosine phosphatase (PTP) family AT1G71860 51.316 2.41e-100 296.0
Tako2g00221 . 46 203 Protein tyrosine phosphatase (PTP) family AT1G05000 74.684 2.64e-87 254.0
Tako2g00451 . 29 611 Protein tyrosine phosphatase (PTP) family AT3G19420 67.002 0.0 799.0
Tako2g01640 . 1135 1291 Protein tyrosine phosphatase (PTP) family AT5G58160 68.79 2.51e-65 219.0
Tako2g01996 . 100 312 Protein tyrosine phosphatase (PTP) family AT2G35680 53.521 3.12e-70 215.0
Tako2g03367 . 8 125 Protein tyrosine phosphatase (PTP) family AT3G02800 61.017 7.59e-49 155.0
Tako2g04147 . 1135 1291 Protein tyrosine phosphatase (PTP) family AT5G58160 68.79 2.51e-65 219.0
Tako2g05465 . 62 590 Protein tyrosine phosphatase (PTP) family AT3G01510 72.505 0.0 805.0
Tako2g05466 . 102 590 Protein tyrosine phosphatase (PTP) family AT3G01510 71.429 0.0 735.0
Tako2g05988 . 1 378 Protein tyrosine phosphatase (PTP) family AT3G52180 59.211 5.60e-155 439.0
Tako2g06416 . 119 223 Protein tyrosine phosphatase (PTP) family AT5G56610 31.481 2.08e-06 45.8
Tako2g06850 . 30 282 Protein tyrosine phosphatase (PTP) family AT3G10940 74.419 9.07e-142 399.0
Tako3g01195 . 72 462 Protein tyrosine phosphatase (PTP) family AT3G55270 58.883 1.72e-168 501.0
Tako3g01196 . 72 462 Protein tyrosine phosphatase (PTP) family AT3G55270 58.883 1.72e-168 501.0
Tako3g03485 . 14 912 Protein tyrosine phosphatase (PTP) family AT5G23720 63.082 0.0 1103.0
Tako3g03486 . 214 912 Protein tyrosine phosphatase (PTP) family AT5G23720 62.197 0.0 835.0
Tako3g04429 . 451 534 Protein tyrosine phosphatase (PTP) family AT3G01510 35.714 6.71e-07 48.5
Tako3g04430 . 451 534 Protein tyrosine phosphatase (PTP) family AT3G01510 35.714 6.71e-07 48.5
Tako3g04431 . 451 534 Protein tyrosine phosphatase (PTP) family AT3G01510 35.714 1.72e-07 48.9
Tako3g04433 . 451 534 Protein tyrosine phosphatase (PTP) family AT3G01510 35.714 1.72e-07 48.9
Tako4g00181 . 233 293 Protein tyrosine phosphatase (PTP) family AT3G10550 67.213 4.36e-25 95.9
Tako4g00207 . 1 657 Protein tyrosine phosphatase (PTP) family AT5G01290 54.453 0.0 711.0
Tako4g04290 . 20 215 Protein tyrosine phosphatase (PTP) family AT1G05000 70.051 8.46e-98 281.0
Tako4g04320 . 464 535 Protein tyrosine phosphatase (PTP) family AT3G01510 34.722 5.14e-06 45.1
Tako5g00395 . 1 656 Protein tyrosine phosphatase (PTP) family AT5G01290 62.181 0.0 847.0
Tako5g02354 . 464 535 Protein tyrosine phosphatase (PTP) family AT3G01510 34.722 4.69e-06 45.1
Tako5g03567 . 1 784 Protein tyrosine phosphatase (PTP) family AT3G55270 50.605 0.0 715.0
Tako5g03761 . 138 840 Protein tyrosine phosphatase (PTP) family AT3G10550 65.0 0.0 940.0
Tako5g03762 . 138 840 Protein tyrosine phosphatase (PTP) family AT3G10550 65.0 0.0 940.0
Tako5g03763 . 138 294 Protein tyrosine phosphatase (PTP) family AT3G10550 63.694 1.38e-69 223.0
Tako5g03764 . 6 111 Protein tyrosine phosphatase (PTP) family AT3G10550 58.716 2.14e-33 120.0
Tako6g00627 . 1 396 Protein tyrosine phosphatase (PTP) family AT5G58160 53.25 1.20e-148 461.0
Tako6g00895 . 72 423 Protein tyrosine phosphatase (PTP) family AT3G55270 58.239 1.96e-150 441.0
Tako6g02582 . 84 301 Protein tyrosine phosphatase (PTP) family AT3G10550 51.376 2.03e-63 213.0
Tako6g02667 . 1 396 Protein tyrosine phosphatase (PTP) family AT5G39400 50.376 2.95e-132 382.0
Tako6g02668 . 53 396 Protein tyrosine phosphatase (PTP) family AT5G39400 52.174 5.38e-121 352.0
Tako6g02669 . 36 396 Protein tyrosine phosphatase (PTP) family AT5G39400 46.849 7.08e-107 317.0
Tako6g04075 . 1 312 Protein tyrosine phosphatase (PTP) family AT2G35680 55.449 5.16e-112 325.0
Tako6g04080 . 45 611 Protein tyrosine phosphatase (PTP) family AT3G19420 61.268 0.0 692.0
Tako6g04081 . 181 611 Protein tyrosine phosphatase (PTP) family AT3G19420 63.573 0.0 558.0
Tako6g04082 . 181 611 Protein tyrosine phosphatase (PTP) family AT3G19420 59.397 6.13e-178 506.0
Tako7g00497 . 47 203 Protein tyrosine phosphatase (PTP) family AT1G05000 64.78 2.13e-75 224.0
Tako7g00498 . 47 154 Protein tyrosine phosphatase (PTP) family AT1G05000 65.455 2.44e-47 151.0
Tako7g01543 . 34 227 Protein tyrosine phosphatase (PTP) family AT5G56610 70.918 1.80e-100 292.0
Tako7g01544 . 34 227 Protein tyrosine phosphatase (PTP) family AT5G56610 70.918 1.80e-100 292.0
Tako7g02585 . 265 337 Protein tyrosine phosphatase (PTP) family AT3G52180 38.667 3.24e-07 50.4
Tako7g02586 . 265 337 Protein tyrosine phosphatase (PTP) family AT3G52180 38.667 3.24e-07 50.4
Tako7g04754 ACH 459 536 Protein tyrosine phosphatase (PTP) family AT3G01510 35.443 6.65e-06 46.6
Tako7g04755 ACH 459 536 Protein tyrosine phosphatase (PTP) family AT3G01510 35.443 2.80e-06 46.6
Tako8g00083 . 1135 1291 Protein tyrosine phosphatase (PTP) family AT5G58160 68.153 4.46e-65 215.0
Tako8g00283 . 1 336 Protein tyrosine phosphatase (PTP) family AT5G58160 54.142 2.48e-131 414.0
Tako8g00280 . 1 336 Protein tyrosine phosphatase (PTP) family AT5G58160 54.142 3.35e-131 414.0
Tako8g00286 . 806 1286 Protein tyrosine phosphatase (PTP) family AT5G58160 48.554 7.10e-137 426.0
Tako8g01116 . 18 209 Protein tyrosine phosphatase (PTP) family AT5G56610 69.271 1.77e-100 291.0
Tako8g03267 . 29 611 Protein tyrosine phosphatase (PTP) family AT3G19420 67.169 0.0 801.0
Tako8g03879 . 63 239 Protein tyrosine phosphatase (PTP) family AT3G44620 74.576 1.41e-94 273.0